| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2501 |
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| Symbol | |
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| ID | 5713398 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2657746 |
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| End bp | 2659947 |
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| Gene Length | 2202 bp |
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| Protein Length | 733 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641268424 |
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| Product | ABC transporter |
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| Protein accession | YP_001533835 |
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| Protein GI | 159045041 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.576449 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCCTG CTGACCGCAA GGACACCGCG CGTCTGACCA TTTCGCGGCG GGACGGCGCG
CAGGCGCCAC AGCTGGACTG GGATCTCGAC CCGCAGGTTT TCGACCCGCT CGCAGAGGCG
CTGGGAGGTG CGCTGCGCTT GCGCGGGCAT GATGTGGGGG CACGGGCCCT GGTGGCCAAC
CTGTCCCTAC CGGCTGATGG CAAGCTGACG CCCGCCCGCG CCGTTGCCGC CGCCGAGGCC
CAAAGCCACG CCGCGCGGCT GGTGCGCCGG GATCTGTCGG ACCTGCCGGA CGCGGTGCTG
CCGGCGGTCC TGTTTCTGGA GGGCCGCGAT GCTTGCGTGC TGATCGCGCG CGACGGAGAC
ACCGTGCGGG TGCTCTGGCC CTCCCGCGGG TCGGAGGAGT TCACGGTCGA GTTGGCGGCT
TTGCGCGCGG TATACATGGG ACATGTATTG CTGATCCGCG CCGAGCCGGG TGTCGCGGCA
CCGGCACCCG GCAGCGCGAT ACAGGGGCAA GGGCACTGGT TCTGGGGGGC TGTGCGGCGG
CATTGGCCCG CCTATACCCA GGTCATCCTC GCCTCGGCGG TGATCAACCT GCTGGCGCTC
GCGGTGCCGA TCTTCACCAT GAATGTCTAT GACCGGGTGT TTCCCAATGC GGCGCTGATC
ACGCTCTGGT CGCTGGTGAT CGGTGTCGGG CTGGCCCTGA TCGTCGATGC GGGGCTGAAG
GCCCTGCGTG CGCAGCTCGT GGACGTGGTG GGACGGCAGG TGGACTTGGC CGTATCGTCG
GAGATCTTCC GCCATGTCTC GGACTTGCGA CTGTCGGCGC GCACGGCCCC GGCAGGCACG
TTGATGAACA CGCTCAAGGA TTTCGAGCAG GTGCGCGATG TGTTCTCGTC GCAAACGGTC
GCCACGCTGA CCGACCTGGC GTTTACCGCG GTGTTCATCG CGGTGATCGC CTATATCGGC
GGACCGCTGG CCTGGCCGCC GGCGCTGGCG GTTTTGACGG TTCTTGTCTT CGGGGTGCTG
GTCCTGATCC CGTTGCGAAA CGCGGTGGGC ACGGTGCGCC AGACTGGCGG CGCGAAGACG
GCGGTGGCCA GCGAGGCGAT GAACGAGCTC GAAACCCTGA AATCCGTGGG CGGACAAGGC
CGGATGCAGG ACAGGTGGGA GCAGCAGGTC ACGCAGAACG CCAAGGCCGA AGAGCGCGCC
CGACGCCTGT CGACGGTGGC AACGACGCTG ACCGGGCTGG TGGGGCAGCT GTCCTCGGTC
GGGATCGTTG TGATCGGGGT GTACCTGGCG CTGGAGGGTC AGATCACCAT GGGGGCGGTG
ATCGCGGCGA TGATCCTGTC GGGTCGGGCG CTGGCGCCCA CGGCGGCGCT CGCGGCGCTA
TTCGTGCGGG CGAGCTTCGC GGTCTCCACC CTGCGCAGCC TGGACGAGTT GATGGCGCTG
CCGTCGGACG GCACGCCGGG CGCGCGGCGG CTCAACAAGC GGGTCTCGGA TGGAGCGCTG
GAGTTGCGCG GTGCCAAGCT GACCTATGGC GATGCGCCTC AGCCCGCGCT CACCGATCTG
TCCCTGTCGA TCGACGCCGG GGCGCGGGTC GCACTGATCG GCCCGGTCGG GGCGGGCAAG
ACGAGCCTCG TGCGGCTGCT GGCGGGTCTC TACCAGCCCG ACGAGGGGCT GGTGCTGATC
GACGGGCTGA ACATGGCCCA GCTGCACCCG GCGGAGCTGC GCGCGGATGT GCAGCTGGTC
CCGCAGGAAC CTGTCCTGTT CTCGGGCACC CTGGCTGAGA ACATCGCCTT CGGCAAACGC
GGGGCCAGCG ATGCGGAGAT CCTGCGCGCC GCGCGGCTGG CGGGGGTGGA TGCCCTCGCG
GCCAGCCATC CCGAAGGCTT CGCCATGCCC ATTGCCGAGC GCGGGCGGAA CATGTCGGGC
GGGCAACGGC AGATGGTGGC GCTGGCGCGG GCGCTGCTGC CTCGGCCCAA GGTGCTGCTG
CTGGATGAAC CGACCTCTTC CATGGATCAG CAGGCGGAGC GGCGGTTCAT CGACCGGTTG
CGGAGCGCGC TGGACGCGCA CCCGATGACC TTGGTGGTGG CCACGCATCG GATGGGCCTG
TTGGAGTTGA CCGACCGGGT GGTGCTGATG CAGGCGGGCA AGGTGCAGAT GGACGGGCCG
AAGGCGGATA TCCTCGCCAC GCTCAAGGGC GGGACGTCAT GA
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| Protein sequence | MRPADRKDTA RLTISRRDGA QAPQLDWDLD PQVFDPLAEA LGGALRLRGH DVGARALVAN
LSLPADGKLT PARAVAAAEA QSHAARLVRR DLSDLPDAVL PAVLFLEGRD ACVLIARDGD
TVRVLWPSRG SEEFTVELAA LRAVYMGHVL LIRAEPGVAA PAPGSAIQGQ GHWFWGAVRR
HWPAYTQVIL ASAVINLLAL AVPIFTMNVY DRVFPNAALI TLWSLVIGVG LALIVDAGLK
ALRAQLVDVV GRQVDLAVSS EIFRHVSDLR LSARTAPAGT LMNTLKDFEQ VRDVFSSQTV
ATLTDLAFTA VFIAVIAYIG GPLAWPPALA VLTVLVFGVL VLIPLRNAVG TVRQTGGAKT
AVASEAMNEL ETLKSVGGQG RMQDRWEQQV TQNAKAEERA RRLSTVATTL TGLVGQLSSV
GIVVIGVYLA LEGQITMGAV IAAMILSGRA LAPTAALAAL FVRASFAVST LRSLDELMAL
PSDGTPGARR LNKRVSDGAL ELRGAKLTYG DAPQPALTDL SLSIDAGARV ALIGPVGAGK
TSLVRLLAGL YQPDEGLVLI DGLNMAQLHP AELRADVQLV PQEPVLFSGT LAENIAFGKR
GASDAEILRA ARLAGVDALA ASHPEGFAMP IAERGRNMSG GQRQMVALAR ALLPRPKVLL
LDEPTSSMDQ QAERRFIDRL RSALDAHPMT LVVATHRMGL LELTDRVVLM QAGKVQMDGP
KADILATLKG GTS
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