| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2452 |
|---|
| Symbol | |
|---|
| ID | 5714108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2596056 |
|---|
| End bp | 2596997 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641268375 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001533787 |
|---|
| Protein GI | 159044993 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3757] Lyzozyme M1 (1,4-beta-N-acetylmuramidase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATGC CCGCTCTCAG CGCCATCCTG CTGGCCGTGC TCACAGTCCT CGCCCTGGCC
CTGATCACGG TTCCGCCCGC GGACATCTCG TCCCGGGAAC TGACCCGGGC CGAGCGCAAG
GCCATCGCGC GGGAGACCGC CGCGGCGTCC GGCACACCCT CCCCGACGGC CCCCGCGACG
CAGGACGGCA CGGAAGCGCC CGCCGCAACC GCCGGGACGC CGGCCACGGC ATCGGTGATC
CCCCCGGGCG GCGCCTTCGG CTTTCCCACG AACGTACCCG AAGGCAGCAC CGAGTTCGGC
ATCGACGTGT CACATTACAA CATCCAGAAG GGCAACGCGA AGATCAACAT CACTTGGGCA
GACGTGGCCC AGAGCAAGGT GGCTTATGTC TATATCAAGG CCAGCCAGGG CCGGACGGTG
AAGGATTCCG AGTTCGACAC CAGCTGGAAC GAAGCGGGCA AGGCCAAGAT CCCGCGTGGG
GCCTATCACT TCCTGTCGGC GCTGTCGGAT CCGGCGGCCC AGGCGCGGTT CTTCCTGTCG
GTCTATGACG CGCGCAGCTC CAGCGACCTG CCGCCGGTTC TGGACGTGGA ATGGGACTAT
ACCGAGAAGA AAGTCGACCG CTGGGAACAG AAAACTCCGG CCCAGATCGT CGCCGCCGTG
GACACCTGGA TGCGTGCGGT GGCCCTGGCC ACGGGCCAGA CCCCGGTGAT CTACACCAAT
CGCGACTGGT GGACCGCGCG GATCGGCGAT GCAGGGGCGG ACCTGGGCAA GCGCTACCCG
GTCTGGCTGG CGGACTACAC GGCAGCCCCC ACCGACAGCG GCTCGGCGCC TGCGGCGCTG
GAGGGGTTCA ACACCGTGAT GTGGCAGTTC ACCGACAAGG GTGCGGTGCC GGGGGTTAGC
GGCGATGTGG ACGTGAACGT CCGCGTCCAA CCCACCCGCT GA
|
|---|
| Protein sequence | MSMPALSAIL LAVLTVLALA LITVPPADIS SRELTRAERK AIARETAAAS GTPSPTAPAT
QDGTEAPAAT AGTPATASVI PPGGAFGFPT NVPEGSTEFG IDVSHYNIQK GNAKINITWA
DVAQSKVAYV YIKASQGRTV KDSEFDTSWN EAGKAKIPRG AYHFLSALSD PAAQARFFLS
VYDARSSSDL PPVLDVEWDY TEKKVDRWEQ KTPAQIVAAV DTWMRAVALA TGQTPVIYTN
RDWWTARIGD AGADLGKRYP VWLADYTAAP TDSGSAPAAL EGFNTVMWQF TDKGAVPGVS
GDVDVNVRVQ PTR
|
|---|
| |