| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2446 |
|---|
| Symbol | |
|---|
| ID | 5714102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2589015 |
|---|
| End bp | 2589926 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641268369 |
|---|
| Product | putative dihydrodipicolinate synthetase |
|---|
| Protein accession | YP_001533781 |
|---|
| Protein GI | 159044987 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.314144 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCT ATTCCGGCAT CTGGCCCGTC GCCCCGACCC CCTTCAACGA GGATGGCACC
CTCGATCTCG ATGGCATGAA GCGGGTCCTC GATTGTTTGA TCGACCAGGG GGCGGACGGG
ATCTGCGTGC TCGCCAACTA CTCCGAGCAG TTCCTGATTT CCGATGCCGA ACGCGAGGTT
CTGGCCCGGC TGAGCGTGGA GCATGTGGCC GGCCGTGTCC CGGTGATCGT CACCATCAGC
CATTTCGCCA CCCAGATCGC GGTGGAGCGC GCGCGCTTTG CCAAGGATCT CGGCGCCGAT
ATCGTGATGA TGATGCCGCC CTATCACGGC GCGCTCCTGA AGGGCACGCC GGAGCAGTCG
TTCGAGCAGT TCGCCGCCGT GGGCGAGGTG GGCATCCCGA TCATGGTGCA GGATGCGCCG
CTCTCGGGGG TCGATCTGCC CGTGGACCTG CTGGTGCGCA TGGCGCGCGA GATCGAGGCC
GTGAAGCTCT TCAAGATCGA GTGCCCAAGG GCGGCCAACA AGATCCGCGC CTTGATCGCG
CAGGGCGGTG CGGCCATCGA GGGCCCGTTC GACGGGGAGG AAGCCATCAC CCTGCTGGCC
GATCTCGATG CCGGGGCCAC CGGCACGATG ACCAGCGGCA TGATCGTGGA CCAGATCAAG
CCCGTGCTGA CCAGGTACCA CGCAGGCGAT GTCTCCGGCG CGACCGAGGC CTACGGGCGG
GTCGCCATGG CGATCATCCA CGAGAACCGC CAATGCGGCT GGCAGTCCTG CAAGGCCGCG
ATGGTGGAGG GCGGCGTGAT CGCCTCGGAA TTCTGCCGCC ACCCGATCGC GCCCCTGCAC
CCGGCGATCC GGGCCCGGCT GATCGACCTG CTGCGCCCGC TCGACCCCCT CGTCCTGCGT
TGGGGGCGGT GA
|
|---|
| Protein sequence | MNTYSGIWPV APTPFNEDGT LDLDGMKRVL DCLIDQGADG ICVLANYSEQ FLISDAEREV
LARLSVEHVA GRVPVIVTIS HFATQIAVER ARFAKDLGAD IVMMMPPYHG ALLKGTPEQS
FEQFAAVGEV GIPIMVQDAP LSGVDLPVDL LVRMAREIEA VKLFKIECPR AANKIRALIA
QGGAAIEGPF DGEEAITLLA DLDAGATGTM TSGMIVDQIK PVLTRYHAGD VSGATEAYGR
VAMAIIHENR QCGWQSCKAA MVEGGVIASE FCRHPIAPLH PAIRARLIDL LRPLDPLVLR
WGR
|
|---|
| |