| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2434 |
|---|
| Symbol | |
|---|
| ID | 5714090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2575507 |
|---|
| End bp | 2576508 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641268357 |
|---|
| Product | putative periplasmic binding abc transporter protein |
|---|
| Protein accession | YP_001533769 |
|---|
| Protein GI | 159044975 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02637] rhamnose ABC transporter, rhamnose-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTC GCACCTTCAC CAAACTCACC GCAGGGCTCA GCCTTGCCGC CAGCCTGTTC
GGCACAACCG CCATGGCCCA GGACGAGATG CGCATCGCCC TCGTCGTGAA GGCCCTCGGC
ATCGGCTTCT TCGAGGCCGC CGCCCAGGGC GCCGAGGAAG CCGCCGCGGA ACTCGGGGGC
GTCGAGATCA TCTATACCGG TCCCACCGAC ACCACGGCCG AGGGCCAGAT CGAGGTAATC
AATTCGCTGA TCGCCCAGGG CGTTGATGCC ATCGCGGTGT CGGCCAATGA CACCGATGCG
CTGGTCCCGA CGCTCAAGAA GGCGATGCAG CGGGGCATCA CGGTGATATC CTGGGATTCC
GGCGTGGCCC CCGAAGGGCG CCAGATGCAC CTGAACCCCT CCTCCAACGC CCTGATCGGG
AACATGATCA TCAAGCTTGC CGCCGATCAT TTGCCCGATG GCGGGGATGT CGCGGTTCTG
TCCGCGACCA CCACCTCGAC CAACCAGAAC ATCTGGATCG AAGAGATGAC CAAGGTGCTG
GGCGACTATC CGGGCATCAA CGTGGTCTCC ACCGTCTATG GCGATGACCT GGCCGACAAG
TCCTACCGCG AAGCGCAGGG CCTGATGCAG TCCTTCCCGG ACCTCGATGC GATCATCGCG
CCCACCTCCG TCGGGATCGT CGCCGCGGCA CAAGCGGTCG CGGATGCGGG CAAGATCGGC
CAGGTCAACG TGACCGGCCT TGGCCTGCCC TCCGAGATGG CCGGTGCCAT CGAAAGCGGC
GCATCCAAGT CCTTCGCGAT CTGGAACCCG ATCGATCTGG GCTACTCGGC CGCGATGATC
GCCCATGCGC TCGCCTCCGG CGCGGCCACG GCGGAGCCGG GGACAGAGAT CTCCATCGGG
CGCGTCGGGA CCATCACCCT GGACGAGAAC AACGAGGCCG CCATGGCCGA TCCGTTCATC
TACGACGCCT CCAACATCGA TCAGTTCAAG TCGATCTTCT AG
|
|---|
| Protein sequence | MKRRTFTKLT AGLSLAASLF GTTAMAQDEM RIALVVKALG IGFFEAAAQG AEEAAAELGG
VEIIYTGPTD TTAEGQIEVI NSLIAQGVDA IAVSANDTDA LVPTLKKAMQ RGITVISWDS
GVAPEGRQMH LNPSSNALIG NMIIKLAADH LPDGGDVAVL SATTTSTNQN IWIEEMTKVL
GDYPGINVVS TVYGDDLADK SYREAQGLMQ SFPDLDAIIA PTSVGIVAAA QAVADAGKIG
QVNVTGLGLP SEMAGAIESG ASKSFAIWNP IDLGYSAAMI AHALASGAAT AEPGTEISIG
RVGTITLDEN NEAAMADPFI YDASNIDQFK SIF
|
|---|
| |