Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_2422 |
Symbol | murC |
ID | 5714078 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 2561559 |
End bp | 2562971 |
Gene Length | 1413 bp |
Protein Length | 470 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641268345 |
Product | UDP-N-acetylmuramate--L-alanine ligase |
Protein accession | YP_001533757 |
Protein GI | 159044963 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0773] UDP-N-acetylmuramate-alanine ligase |
TIGRFAM ID | [TIGR01082] UDP-N-acetylmuramate--alanine ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.25008 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.408783 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGACA GCTTCGTCAT GAACGCCGCC ACGAAACTTC CCACCCAGCT CGGGCCGATC CACTTCACCG GCATCGGCGG GATCGGCATG TCGGGCATCG CCGAAGTGCT GCTGACCCAT GGCTACACGG TGCAGGGCTC GGACCTGAAA CCGTCGAAGA TCACCGAAAG GCTGGAGCGG CTGGGCGCGA AGATCTTCAT CGGGCAGGTG GGCGAGAACC TGGCCGATGC GGAGGTCGTG GTGATCTCCT CGGCGATCAA GCCGGGCAAC CCGGAGCTTG AGACCGCCCG CGCCCGCGGC CTGCCGGTGG TGCGCCGGGC CGAGATGCTG GCGGAGCTGA TGCGGCTGAA ATCGAACATC GCCATCGCGG GCACCCATGG CAAGACGACC ACCACCACGA TGGTCGCCAC GCTGCTCGAC CGGGGCGGGA TCGACCCCAC GGTGATCAAT GGCGGGATCA TCCATGCCTA CGACTCCAAC GCGCGCGCCG GGGCGGGCGA GTGGATGGTG GTGGAGGCCG ACGAGAGCGA CGGCACCTTC AACCGTCTGC CCGCGACCAT TGCGGTGGTC ACGAATATCG ATCCTGAACA TATGGAACAT TGGGGCAGCT TCGAGCGGCT CAAGGACGGG TTTCACGAGT TCGTATCGAA CATTCCGTTC TACGGGCTGG CGGTCTGCTG CACCGACCAC CCGGAGGTGC AGGCGCTGGT CGGGCGGATC ACCGACCGCC GCGTCGTGAC CTTCGGCTTC AACACCCAAG CCGATGTGCG CGCGGTCAAC CTGACCTACA AGTCCGGCGT CGCCCATTTC GACATCCTGC TGCGCAACGA GGGGCAGGTG ATCTCGGGCT GCACCCTGCC GATGCCGGGC GATCACAACG TCTCCAACGC GCTGGCCGCC GTTGCCGTGG CCCGGCACCT GGGCATGAAG CGCGACGAGA TCCGCGCGGC CCTGGCCGGG TTCGCGGGCG TCAACCGCCG CTTCACAAAG GTCGCCGAGC TGGGCGGTGT CACCATCATC GACGATTACG GCCACCACCC GGTGGAGATC GCCGCCGTGC TCAAGGCCGC GCGCCAGGCC AGCGAGGGCC GGGTGATCGC CGTGCACCAG CCGCACCGGT TTTCCCGGCT CGCGAGCCTG TTCGAGGATT TCTGCACCTG CTTCAACGAG GCGGATGTGG TCGGCATCTC CGACATTTTC GCCGCCGGCG AAGACCCGAT CCCGGGCGCC TCCCGCGACG ATCTGGTCAA GGGGCTGATC GCCCATGGCC ATCGCCACGC GGTCGCGGTG CCCGACGAGG ATGCGCTGGA GGCGCTGATC CGGGCCGAGG CCAAGCCGGG CGATATCGTG GTCTGCCTCG GGGCCGGGAC GATCTCGACC TGGGCGCATA ACCTGCCCGC GCGCATGGGG TGA
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Protein sequence | MKDSFVMNAA TKLPTQLGPI HFTGIGGIGM SGIAEVLLTH GYTVQGSDLK PSKITERLER LGAKIFIGQV GENLADAEVV VISSAIKPGN PELETARARG LPVVRRAEML AELMRLKSNI AIAGTHGKTT TTTMVATLLD RGGIDPTVIN GGIIHAYDSN ARAGAGEWMV VEADESDGTF NRLPATIAVV TNIDPEHMEH WGSFERLKDG FHEFVSNIPF YGLAVCCTDH PEVQALVGRI TDRRVVTFGF NTQADVRAVN LTYKSGVAHF DILLRNEGQV ISGCTLPMPG DHNVSNALAA VAVARHLGMK RDEIRAALAG FAGVNRRFTK VAELGGVTII DDYGHHPVEI AAVLKAARQA SEGRVIAVHQ PHRFSRLASL FEDFCTCFNE ADVVGISDIF AAGEDPIPGA SRDDLVKGLI AHGHRHAVAV PDEDALEALI RAEAKPGDIV VCLGAGTIST WAHNLPARMG
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