Gene Dshi_2422 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_2422 
SymbolmurC 
ID5714078 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp2561559 
End bp2562971 
Gene Length1413 bp 
Protein Length470 aa 
Translation table11 
GC content67% 
IMG OID641268345 
ProductUDP-N-acetylmuramate--L-alanine ligase 
Protein accessionYP_001533757 
Protein GI159044963 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0773] UDP-N-acetylmuramate-alanine ligase 
TIGRFAM ID[TIGR01082] UDP-N-acetylmuramate--alanine ligase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.25008 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.408783 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGACA GCTTCGTCAT GAACGCCGCC ACGAAACTTC CCACCCAGCT CGGGCCGATC 
CACTTCACCG GCATCGGCGG GATCGGCATG TCGGGCATCG CCGAAGTGCT GCTGACCCAT
GGCTACACGG TGCAGGGCTC GGACCTGAAA CCGTCGAAGA TCACCGAAAG GCTGGAGCGG
CTGGGCGCGA AGATCTTCAT CGGGCAGGTG GGCGAGAACC TGGCCGATGC GGAGGTCGTG
GTGATCTCCT CGGCGATCAA GCCGGGCAAC CCGGAGCTTG AGACCGCCCG CGCCCGCGGC
CTGCCGGTGG TGCGCCGGGC CGAGATGCTG GCGGAGCTGA TGCGGCTGAA ATCGAACATC
GCCATCGCGG GCACCCATGG CAAGACGACC ACCACCACGA TGGTCGCCAC GCTGCTCGAC
CGGGGCGGGA TCGACCCCAC GGTGATCAAT GGCGGGATCA TCCATGCCTA CGACTCCAAC
GCGCGCGCCG GGGCGGGCGA GTGGATGGTG GTGGAGGCCG ACGAGAGCGA CGGCACCTTC
AACCGTCTGC CCGCGACCAT TGCGGTGGTC ACGAATATCG ATCCTGAACA TATGGAACAT
TGGGGCAGCT TCGAGCGGCT CAAGGACGGG TTTCACGAGT TCGTATCGAA CATTCCGTTC
TACGGGCTGG CGGTCTGCTG CACCGACCAC CCGGAGGTGC AGGCGCTGGT CGGGCGGATC
ACCGACCGCC GCGTCGTGAC CTTCGGCTTC AACACCCAAG CCGATGTGCG CGCGGTCAAC
CTGACCTACA AGTCCGGCGT CGCCCATTTC GACATCCTGC TGCGCAACGA GGGGCAGGTG
ATCTCGGGCT GCACCCTGCC GATGCCGGGC GATCACAACG TCTCCAACGC GCTGGCCGCC
GTTGCCGTGG CCCGGCACCT GGGCATGAAG CGCGACGAGA TCCGCGCGGC CCTGGCCGGG
TTCGCGGGCG TCAACCGCCG CTTCACAAAG GTCGCCGAGC TGGGCGGTGT CACCATCATC
GACGATTACG GCCACCACCC GGTGGAGATC GCCGCCGTGC TCAAGGCCGC GCGCCAGGCC
AGCGAGGGCC GGGTGATCGC CGTGCACCAG CCGCACCGGT TTTCCCGGCT CGCGAGCCTG
TTCGAGGATT TCTGCACCTG CTTCAACGAG GCGGATGTGG TCGGCATCTC CGACATTTTC
GCCGCCGGCG AAGACCCGAT CCCGGGCGCC TCCCGCGACG ATCTGGTCAA GGGGCTGATC
GCCCATGGCC ATCGCCACGC GGTCGCGGTG CCCGACGAGG ATGCGCTGGA GGCGCTGATC
CGGGCCGAGG CCAAGCCGGG CGATATCGTG GTCTGCCTCG GGGCCGGGAC GATCTCGACC
TGGGCGCATA ACCTGCCCGC GCGCATGGGG TGA
 
Protein sequence
MKDSFVMNAA TKLPTQLGPI HFTGIGGIGM SGIAEVLLTH GYTVQGSDLK PSKITERLER 
LGAKIFIGQV GENLADAEVV VISSAIKPGN PELETARARG LPVVRRAEML AELMRLKSNI
AIAGTHGKTT TTTMVATLLD RGGIDPTVIN GGIIHAYDSN ARAGAGEWMV VEADESDGTF
NRLPATIAVV TNIDPEHMEH WGSFERLKDG FHEFVSNIPF YGLAVCCTDH PEVQALVGRI
TDRRVVTFGF NTQADVRAVN LTYKSGVAHF DILLRNEGQV ISGCTLPMPG DHNVSNALAA
VAVARHLGMK RDEIRAALAG FAGVNRRFTK VAELGGVTII DDYGHHPVEI AAVLKAARQA
SEGRVIAVHQ PHRFSRLASL FEDFCTCFNE ADVVGISDIF AAGEDPIPGA SRDDLVKGLI
AHGHRHAVAV PDEDALEALI RAEAKPGDIV VCLGAGTIST WAHNLPARMG