| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2419 |
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| Symbol | ddl |
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| ID | 5714075 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2559329 |
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| End bp | 2560255 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641268342 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_001533754 |
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| Protein GI | 159044960 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.000977775 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.223955 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGCGGG ACGTGTCGAG CAAGGCATCC CCCAAGGTGG CCATGATGAT GGGCGGTACC
TCGTCGGAAC GCGCCGTGTC CCTGTCGTCG GGACGCGAAT GCGGGGCTGC GCTCCGGGCA
GAGGGGTTCG AGGTGATCGA CCTCGATGCG GGTCCGGACC TGGCCGCGCG GCTCGAAGAT
CTGCGCCCGG ACGTGGTGTT CAACGCGCTC CATGGCCGCT GGGGGGAGGA TGGCTGCGTG
CAGGGCCTGC TGGAATGGCT GCGCATCCCC TATACCCATT CGGGCGTGCT GGCCTCGGCC
CTGGCGATGG ACAAGGAACG CACCAAGGCC GCCTATGCGG CGGCCGGGCT GCCGATCGCC
ACGAGCGGGC TTTTCACCAG GGCGCAGATC GCCGCGCGCC ACGTGATGCC GCCGCCTTAC
GTGATCAAAC CCTATAATGA GGGCTCGTCC GTCGGGGTGT ACCTGGTGCC CGAGGGGGCG
GAGGCCGCGC CGGAGCTGGC GGACGACCTG CCCGACACGC TGATGGTGGA GGCCTTCGTG
CCCGGGCGGG AGCTGACCGT GACCGTGCAG GGGGACCGCG CGCTCTGTGT CACCGATATC
GTGACCGAGG GCTGGTACGA TTACGACGCG AAATACGTCC CCGGCGGGTC GCGCCATGTA
TTGCCGGCCG AGGTGCCCGG GGATGTCTAC GACGCCTGCA TGGCCCATGC CGAGACCGCG
CACCGGGTAC TCGGCTGCCG CGGGATCTCG CGCACCGATT TCCGCTGGGA TCCGCGCCGC
AGCCTCGATG GGCTGGCCCT GCTGGAGACC AACACCCAGC CGGGGATGAC GCCCACCTCC
CTGACCCCCG AACAGGCGCA GCATGTGGGG CTGGGCTTCG GCGCGCTCTG CCGCTGGATC
GTGGAGGACG CCTCATGCGA CCGTTGA
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| Protein sequence | MRRDVSSKAS PKVAMMMGGT SSERAVSLSS GRECGAALRA EGFEVIDLDA GPDLAARLED
LRPDVVFNAL HGRWGEDGCV QGLLEWLRIP YTHSGVLASA LAMDKERTKA AYAAAGLPIA
TSGLFTRAQI AARHVMPPPY VIKPYNEGSS VGVYLVPEGA EAAPELADDL PDTLMVEAFV
PGRELTVTVQ GDRALCVTDI VTEGWYDYDA KYVPGGSRHV LPAEVPGDVY DACMAHAETA
HRVLGCRGIS RTDFRWDPRR SLDGLALLET NTQPGMTPTS LTPEQAQHVG LGFGALCRWI
VEDASCDR
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