| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2383 |
|---|
| Symbol | ctaD |
|---|
| ID | 5714039 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 2517133 |
|---|
| End bp | 2518809 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641268308 |
|---|
| Product | cytochrome c oxidase subunit 1 |
|---|
| Protein accession | YP_001533720 |
|---|
| Protein GI | 159044926 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
|---|
| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGATG CAGCCATCCA TGGCCACGGT CACGAAGATA CCCGCGGGTT CTTCACCCGT
TGGTTCATGT CGACCAATCA CAAGGATATC GGGATCCTCT ATATCCTCGT GGCGGGTCTG
GCCGGGTTCA TTTCGGTCGC CTTCACGGTT TACATGCGCA TGGAGTTGAT GAACCCCGGC
GTTCAGTACA TGTGTACCGA GGGCGCGCGC TTCATCGCGG CCGGCGCGAA CGATGTCTGT
ACGCCGAACG GGCACCTGTG GAACGTGCTG ATCACCGGCC ACGGCATCCT GATGATGTTC
TTCGTGGTGA TCCCGGCCCT CTTCGGCGGT TTCGGCAACT ATTTCATGCC CTTGCACATC
GGTGCGCCGG ACATGGCCTT CCCGCGGCTG AACAACCTGT CCTTCTGGCT CTACGTGGCC
GGGACGTCGC TGGCGATTGC CTCGGTGCTG GCACCGGGCG GCAATGGCCA GACAGGTTCC
GGCGTGGGCT GGGTGCTCTA TCCGCCGCTG TCCACGACTG AGGCCGGGTT CTCGATGGAT
CTGGCGATCT TCGCGGTCCA CGTGTCGGGC GCCTCGTCGA TCCTCGGCGC GATCAACATC
ATCACGACCT TCCTGAACAT GCGCGCCCCG GGCATGACAC TGTTCAAAGT GCCGCTCTTT
GCCTGGTCGA TCTTCGTCAC CGCCTGGCTG ATTCTTCTGG CCCTGCCGGT TCTGGCGGGC
GCGATCACCA TGTTGTTGAC CGACCGGAAT TTCGGGACGA CCTTCTTCGA CCCGGCCGGC
GGCGGCGACC CGGTGCTTTA TCAGCATATC CTGTGGTTCT TCGGCCACCC GGAAGTCTAC
ATCGTGATCC TGCCAGCCTT CGGCATCATC AGCCACGTGA TCGCGACCTT CTCGCGCAAG
CCCGTCTTCG GCTACATGCC CATGGTCTGG GCGATGATCG CGATCGGCGG CCTGGGCTTC
GTGGTCTGGG CACACCACAT GTACACGGTG GGCATGTCCC TGACCCAGCA GAGCTACTTC
ATGCTGGCGA CCATGGTCAT CGCGGTGCCA ACGGGGGTGA AGATCTTCAG CTGGATCGCG
ACCATGTGGA AGGGGTCTCT GACGTTCGAG ACACCGATGC TCTTTGCCAT CGGGTTCCTG
TTCCTGTTCA CCGTGGGCGG CGTGACCGGT ATCGTGCTGT CCCAGGCGGG CGTCGACCGG
GCCTATCACG ACACCTACTA CGTGGTGGCT CACTTCCACT ACGTGATGAG CCTCGGGGCG
GTGTTCGGAA TCTTCGCCGG GATCTACTTC TGGATCGGCA AGATGTCGGG CCGTCAGTAC
CCGGAATGGG CCGGCAAGGT GCACTTCTGG ACCTTCTTCA TCGGTACCAA CATCACCTTC
TTCCCGCAGC ACTTCCTGGG CCGCCAGGGC ATGCCGCGCC GCTACATCGA TTACCCGGAG
GCCTTCGGGC TCTGGAACTG GGTGTCGAGC TGGGGCGCGT TCCTGTCCTT CGCCTCGTTC
CTCTTCTTCA TCGGTGTGGT CTTCTACACC ATCACCCGCG GCAAGCGCGT GGAAGAAGAG
AACTACTGGA ACGAGCATGC GGACACCCTG GAGTGGACCC TGCCCAACCC GCCGCCCGAG
CACACGTTCG AGCAGCTCCC GACCCGGGAC ATGTGGGACA AGCAGCCGTC GCACTGA
|
|---|
| Protein sequence | MADAAIHGHG HEDTRGFFTR WFMSTNHKDI GILYILVAGL AGFISVAFTV YMRMELMNPG
VQYMCTEGAR FIAAGANDVC TPNGHLWNVL ITGHGILMMF FVVIPALFGG FGNYFMPLHI
GAPDMAFPRL NNLSFWLYVA GTSLAIASVL APGGNGQTGS GVGWVLYPPL STTEAGFSMD
LAIFAVHVSG ASSILGAINI ITTFLNMRAP GMTLFKVPLF AWSIFVTAWL ILLALPVLAG
AITMLLTDRN FGTTFFDPAG GGDPVLYQHI LWFFGHPEVY IVILPAFGII SHVIATFSRK
PVFGYMPMVW AMIAIGGLGF VVWAHHMYTV GMSLTQQSYF MLATMVIAVP TGVKIFSWIA
TMWKGSLTFE TPMLFAIGFL FLFTVGGVTG IVLSQAGVDR AYHDTYYVVA HFHYVMSLGA
VFGIFAGIYF WIGKMSGRQY PEWAGKVHFW TFFIGTNITF FPQHFLGRQG MPRRYIDYPE
AFGLWNWVSS WGAFLSFASF LFFIGVVFYT ITRGKRVEEE NYWNEHADTL EWTLPNPPPE
HTFEQLPTRD MWDKQPSH
|
|---|
| |