| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2346 |
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| Symbol | tgt |
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| ID | 5714001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2479455 |
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| End bp | 2480585 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641268270 |
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| Product | queuine tRNA-ribosyltransferase |
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| Protein accession | YP_001533683 |
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| Protein GI | 159044889 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
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| TIGRFAM ID | [TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming
[TIGR00449] tRNA-guanine transglycosylases, various specificities |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.395355 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.213508 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACACAGA GATTTTCCTT CACGCGCCTC GGACAGGACG GGGCGGCGCG GCTTGGCCGT
ATCAACACGC CCCGCGGAGA GATCCGGACG CCGGCCTTCA TGCCGGTGGG CACGGCGGCC
ACGGTCAAGG CCATGCGCCC CGAAAGCGTG CGCGAGACCG GGGCGGATAT CCTGCTGGGC
AATACCTACC ACCTGATGCT GCGCCCCACG GCGGAGCGGA TCGCGCGCCT CGGCGGGTTA
CACAGGTTCA TGAACTGGGA CCGGCCGATC CTGACCGATT CCGGCGGGTT CCAGGTGATG
AGCCTGACCG GGTTGCGCAA GCTCACCGAG CAGGGCGTGA CTTTCAAGAG CCATATCGAT
GGCTCGAAAC ACATGCTCAG TCCCGAGCGG TCGATGGAGA TCCAGAAACT GCTCCGATCG
GATATCGTCA TGTGCTTCGA CGAGTGCCCG GCCTTGCCCG CGCCGCGGGA GCGGATCACC
GAGAGCATGG AGTTGTCCAT GCGCTGGGCC GCGCGGTCGC GCGAGGCGTT CGGGGACTGG
CCGGGGCATG CGCTCTTCGG GATCCAGCAG GGCGGGCTGG AGGAGGATCT GCGCGGCAAG
AGCGCCGAGG CGCTGCGGGC CATCGAGTTC GACGGCTACG CAGTCGGCGG GCTCGCGGTG
GGCGAGGGGC AGGAGGCGAT GTTCGGCGTG CTGGATTACG CCCCCGGAAT GCTGCCCGAG
GACAAGCCGC GTTACCTGAT GGGGGTCGGC AAGCCCGGCG ACCTGGTGGG CGCGGTCAAG
CGGGGCATCG ACATGTTCGA CTGCGTGCTG CCGTCGCGGT CGGGCCGCAC GGGGCAGGTC
TTCACCCGGC GCGGGGTGGT CAACATCAAG AACGCGCGCC ATGCGGATGA TCCGCGTCCG
CTGGACGAGG ATTGCACCTG CCCGGCCTGC CGCAGTTACA GTCGGGCCTA TCTGCACCAT
GTGTTCCGGG CCGGTGAAAT TCTGTCCTCG ATGCTGCTGA CCTGGCACAA CCTGCATTAC
TACCAGGAGT TGATGCAGGG GATGCGCGAT GCGATCGGTG CCGGGGATTT CGCAGGGTTC
GAGGCGCGGT TTCTGGCGCA GCAGGCCGAG GGCGATATCG CGCCGGTCTG A
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| Protein sequence | MTQRFSFTRL GQDGAARLGR INTPRGEIRT PAFMPVGTAA TVKAMRPESV RETGADILLG
NTYHLMLRPT AERIARLGGL HRFMNWDRPI LTDSGGFQVM SLTGLRKLTE QGVTFKSHID
GSKHMLSPER SMEIQKLLRS DIVMCFDECP ALPAPRERIT ESMELSMRWA ARSREAFGDW
PGHALFGIQQ GGLEEDLRGK SAEALRAIEF DGYAVGGLAV GEGQEAMFGV LDYAPGMLPE
DKPRYLMGVG KPGDLVGAVK RGIDMFDCVL PSRSGRTGQV FTRRGVVNIK NARHADDPRP
LDEDCTCPAC RSYSRAYLHH VFRAGEILSS MLLTWHNLHY YQELMQGMRD AIGAGDFAGF
EARFLAQQAE GDIAPV
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