Gene Dshi_2344 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_2344 
Symbol 
ID5713999 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp2477127 
End bp2478569 
Gene Length1443 bp 
Protein Length480 aa 
Translation table11 
GC content67% 
IMG OID641268268 
Productintegral membrane sensor signal transduction histidine kinase 
Protein accessionYP_001533681 
Protein GI159044887 
COG category[T] Signal transduction mechanisms 
COG ID[COG4564] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.165919 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCCGGT TCATTGCCCC GTATCTGAAG CGCTTGCAGG TCAGCTATGG CCAGAAGCTC 
TTTCTGCTGG CGACCATTCC ACTCGTGCTC GCGGTGGCCG CGATCTCGGT CGTGGTGGCC
GACCAGGGCC GTCAACTGGC GGAGCGCGAG ATCTCAGGGC TGGAAACCCA GCTGATCGAG
GCCAAGAAGC GCGAGCTGCG CAATTACATC CAGCTGGCCC GCACCGCGTT CTTTGCCGAA
TACGGCCGCG CCGCCCCCGA TGACGAGGCC GCCAAGGAAC GGGTGACCCA GATCCTCGCC
GCCATGCTCT ATGGGCGCGA CGGGTTCTTC TTCGTCTATC ATTATGACGG AACCAACCTC
GTGAGCCCGC GCCAGACCGA GCTGATCAAC CGCAACTGGA CCGGCCGCAC CGACAGCAAC
GGCGTCCCCG TGGTGGACGA GTTGGTCCGC ATCGCGCGCG CCGGGGCGGG GTATCACACC
TATGACTGGG TCAAACCCTC CACGGGCGAA GAGGCGCGGA TGATCACCTA CGTGGTCGGC
CTGCAAGACT GGCAATGGGC GCTGGGGACC GGCATTTTCA TCGACGACGT GCTGACGCAC
GTGGCCGCGG CCCGCGCCGC GACCGAGTCC CGCATCGCGC AGACCTTCTT CTGGATCGGG
GCGATCACGC TGGCGGCCCT GCTGGCGGTG TTTGCCTCCG GTTTGCTGAT CAACATCCGC
GAGCGGCGGC TGGCAGACGC CAAACTCAAG GCGCTGACCC AGCGCGTCCT CGACACCCAG
GAGGAAGAGC GCGGCCGCGT GGCCCGCGAG TTGCATGACA GCATCAGCCA ACTTCTCGTG
GGCATCCGCT ACGCGCTGGA ACTGGCCCGA AGGCGGGTCC AGACCGGCGA CGCGCGCGCC
CAGGAGAATA TCGAGAAGGG CATCGATGGG CTGAACGGCG CCATCCAGGA GGTCCGCCGC
ATCAGTCGCG ACCTGCGCCC GGGACAGCTC GACGATCTTG GCCTCGGCCC TGCGATCCAA
GACCTGGCCG AGGAGTTCAC CAAGCGCACC GGCATCCGCG CGGAAATGAA AACGGTCGTG
TTCCGGAATC GCCTCGACCC GGAGGCCAAG ATCGCGCTCT ACCGTATCGC CCAGGAGGCC
CTGACAAATA TCGAACGTCA CGCCCAGGCC ACCGAAGTGC ATCTGGACCT CTTCGGACAC
CAGACCGGCG CGACCCTGCG GGTGGCCGAC AACGGGCGCG GCCTGGCCAA TGTCTCCCGC
GGCGCGGGCG GGCTCGGCCT GCGCAACATG CAGGAGCGGG TCGAACAGCT CGACGGCACG
CTGCAGGTTT TCTCCTCGGA GGCTGGCACC CGAATTGACG CCACCGTGCC ACTCAGTCAC
ATCCTGCCCC CAGAACCGGC CGCCCGCAGC ACCGCGGCCC CCGTCCGAAA GGTCCGCGCA
TGA
 
Protein sequence
MARFIAPYLK RLQVSYGQKL FLLATIPLVL AVAAISVVVA DQGRQLAERE ISGLETQLIE 
AKKRELRNYI QLARTAFFAE YGRAAPDDEA AKERVTQILA AMLYGRDGFF FVYHYDGTNL
VSPRQTELIN RNWTGRTDSN GVPVVDELVR IARAGAGYHT YDWVKPSTGE EARMITYVVG
LQDWQWALGT GIFIDDVLTH VAAARAATES RIAQTFFWIG AITLAALLAV FASGLLINIR
ERRLADAKLK ALTQRVLDTQ EEERGRVARE LHDSISQLLV GIRYALELAR RRVQTGDARA
QENIEKGIDG LNGAIQEVRR ISRDLRPGQL DDLGLGPAIQ DLAEEFTKRT GIRAEMKTVV
FRNRLDPEAK IALYRIAQEA LTNIERHAQA TEVHLDLFGH QTGATLRVAD NGRGLANVSR
GAGGLGLRNM QERVEQLDGT LQVFSSEAGT RIDATVPLSH ILPPEPAARS TAAPVRKVRA