| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2341 |
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| Symbol | |
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| ID | 5713996 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2472393 |
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| End bp | 2474747 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641268265 |
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| Product | putative TRAP C4-dicarboxylate transport system permease |
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| Protein accession | YP_001533678 |
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| Protein GI | 159044884 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.472135 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.197906 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTTTCG GTTTGGACGG CATCGAGATT GGCCTGATCA TCGTGTTCCT GTGCCTGTTT
GGCGGGATCA TGTCGGGCTT CCCCGTGGCC TTCGCCATCG GCGGGGCGGG GGTGATCTCT
TTCGGGATCA TCGCGGCACT GGACAGCGCG GGGCTGCTCA TTCACCAGGC AATCGACACG
GGCAGCGCGG AATACGCGGC CCTGATGGCC GAGGGCGTGG CGCGCGAGGC GATCAGCGTG
TTCCGCTACC CCGAACTGCC TAGGGTCGAA GAGGCGCTCT TTCCCGGCGG CTGGGAACAG
GCGATGGATC GGAACCTGTC CTTCATCGTC AACCGCCTGA ACGAGCGGGT GATCGCGGGC
CAGAGCATCG AGACATTGTT GGCGGTTCTG ATGTTCGTGA TGATGGGCAT CACGCTGGAG
CGCTCCAAGA TCGCCAATGA CCTGCTGACC ACCATGGCGC GGGTGTTCGG CCCGCTGCCC
GGCGGTCTGG CCGTGTCCAT CGTGGTGGTG GGGGCCTTCC TTGCGGCCTC CACGGGGATC
GTGGGCGCGA CCGTCGTGAC CATGGGGCTG CTGGCCCTGC CCACCATGTT GCGCAACGGC
TATTCCAAGG AGCTGTCCAC CGGCGTGATC GCGGCCTCGG GCACGCTGGG CCAGATCATT
CCGCCGTCCA TTGTGATCGT CCTGCTGGGG ACACTGGCGG GCGACATGTA CGCCACCGGG
CAGGAGAAGC GCGCGGTTCT TGCGGGGTGC ACCGACGCGC TGACCTTCCT CGGCGAGCCG
GCGGTTCTGT CGGTGGGCAC GCTCTTCCAG GCGGCCGTGC TGCCGGGGGT GATGTTGGCG
GTGCTCTATG CGCTTTATGC TTTTGGCTAC GCGGCCTTCA ATCCCTCCAA GGCTCCACCC
GTGGTCAGTG ATGCACCCGC CGGTGAGGTC ATTACCCGCA ACGAGGCGCT GACCTGGTTT
CTGGTGGCGC CTTTCGGTCT GATTGCGGCG ATCATCCTGT CGATGAATGT GGGCGTGATC
GGCTCCCAAT CGACCGCCGT GTCGACCATG ACGGAGCTGG GCGAGACAGC GGAGCTGCGC
ACAAATGTCA GCCCGGCCTG CCAGGCCTCG ATGATCGAGC TGCACGGGCA GGAAAAATGG
GATCTGGCCG TCGCGCAGGC TGAACAGATC GCCGCAGGCG GCGGGGCTGC AGAGCGCCGC
GACCTGACGG CCGAAGAGCT CGAGGTGGCT CAGGCCGAGC GCCTGGAAGA TATCGCGCCC
ATCGGCACGG GCCTGAGCGT GTTCTTTCTG CTCTTCGGGC TGATGCTGAT CGTGGCCCGT
GGCGTGGCCC CTCTGGCCAA CCCGGTGCCG CTGCTGATCG GCGGGGCAGG GGTCGTGCTG
GCCTTCCTGA CAGATGCCCT GCTGATCCCG GCGACCATGT CGCCCGGTGG CGCGTTCACG
TTGCTGGCGA TCCCTTTCGC CATGGTTGTT TATGGCTCTC GGGCGGCGAT CACGCGGCTG
GCGCAGAACG ATCTGATCCG CGTGGTGTTC CCACCGCTGG TCCTGATCGT GGCGGTGCTC
GGCTCGATCC TGGGCGGGAT TACCAACCCG ACCCCGGCGG CGGCGCTGGG CGCTGGCGGG
GCGATCATGC TCGCGGCCTA TCGCAAGCTG CGCGAAGAAG AGCGTAACGC CAAGCTGATC
ATCGGCGCTT CCTTCGCGCT CGTTATCCTG ATCGTCATCG GCATCAATTT CGACCTGCGA
ACGGGCGTGG CGGATGTGAG CTTCCAGGAT TGGGTGGCGA TCATCATCGC CCAGGCGGCC
TATCACGTGG CGGTGCTGGG GCTGCTCTAT TCGTGCTGGG TGCTGTTCAC CCGCGGGGTT
TTGAGCCCGG TGGTGCGCGA GACGGCGAAG GTGACCTCGA TGGTCTTCAC CATCCTGATC
GGATCGCAGC TCCTGAACCT CGTGGTGATC TCCTTTGGCG GAGAGCATTA CATCCAGGAG
TTCCTGCGCA GTTTCGACAA CGAGCTGGTG GTGTTCCTGA TCGTGATGCT GGTGCTGTTC
ATCCTGGGCT TCGTGCTCGA TTTCCTGGAG ATCATCTACA TCGTGATCCC GATCGTGGGT
CCGGTGATCT ATGGCGGCAC AATGGACCCG AAATGGGTGA CGATCATGAT TGCCGTGAAC
CTGCAGACCT CGTTCCTGAC ACCGCCTTTC GGCTTCGCGC TGTTCTATTT GCGCGGGGTG
GCGCCGCCTT CGGTGACCAC GGGTCATATC TATCGCGGGG TGTTGCCGTT CGTGTTGATC
CAGGTGGCGG CCCTGGGAAT GCTCTTTGCC TTCCCGGGCG TGGTGACCAT CGTGCCGAAC
CTGCTGGGGA ACTGA
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| Protein sequence | MIFGLDGIEI GLIIVFLCLF GGIMSGFPVA FAIGGAGVIS FGIIAALDSA GLLIHQAIDT
GSAEYAALMA EGVAREAISV FRYPELPRVE EALFPGGWEQ AMDRNLSFIV NRLNERVIAG
QSIETLLAVL MFVMMGITLE RSKIANDLLT TMARVFGPLP GGLAVSIVVV GAFLAASTGI
VGATVVTMGL LALPTMLRNG YSKELSTGVI AASGTLGQII PPSIVIVLLG TLAGDMYATG
QEKRAVLAGC TDALTFLGEP AVLSVGTLFQ AAVLPGVMLA VLYALYAFGY AAFNPSKAPP
VVSDAPAGEV ITRNEALTWF LVAPFGLIAA IILSMNVGVI GSQSTAVSTM TELGETAELR
TNVSPACQAS MIELHGQEKW DLAVAQAEQI AAGGGAAERR DLTAEELEVA QAERLEDIAP
IGTGLSVFFL LFGLMLIVAR GVAPLANPVP LLIGGAGVVL AFLTDALLIP ATMSPGGAFT
LLAIPFAMVV YGSRAAITRL AQNDLIRVVF PPLVLIVAVL GSILGGITNP TPAAALGAGG
AIMLAAYRKL REEERNAKLI IGASFALVIL IVIGINFDLR TGVADVSFQD WVAIIIAQAA
YHVAVLGLLY SCWVLFTRGV LSPVVRETAK VTSMVFTILI GSQLLNLVVI SFGGEHYIQE
FLRSFDNELV VFLIVMLVLF ILGFVLDFLE IIYIVIPIVG PVIYGGTMDP KWVTIMIAVN
LQTSFLTPPF GFALFYLRGV APPSVTTGHI YRGVLPFVLI QVAALGMLFA FPGVVTIVPN
LLGN
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