| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2325 |
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| Symbol | |
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| ID | 5713980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2456174 |
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| End bp | 2457220 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641268249 |
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| Product | putative periplasmic binding protein |
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| Protein accession | YP_001533662 |
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| Protein GI | 159044868 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.000777269 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACAG CCTTCCGCCT GACCGCGACG ACAGCGCTCG CCGTCCTCGC CACCCCGATC
TCGGCCGCTG ATGGCGACCT GATCGTCTTC GACTACGCCG GGTTCGAATT GCCCGAATTC
CACAGCGCCT ATGTCGACGC CCACGGCGCG AGCCCGGAAT TCACCTTCTT CGGCGACGAG
GAAGAGGCCT TCCAGAAAAT GGTGTCCGGC TTTCGCCCGG ATGTCAGCCA CGTCTGCGCG
GGCTCGGTGA CAAAATGGGT CGCCAGCGGC CTGCTGGAGC CTTGGGATAC ATCCCGCATC
CCGGCCTTCG CGGACCTGAA TGCGGATCTG ACCGGGCAGG ACGTGACCGA AGGCACCGGA
AACACCTACT TCATCCCGCT GGATTTCGGC TCCACCGGCA TCGCGTACAA CATGGACGAA
GTCCCGGCAG AGGACGTGGC GAGCCTCGAC GTGTTCCGCA ATCCGAAATA CGCCCAGCGG
ATCACCCTGC CGGACAATGT CGACGATGCC TACGCCCTTG CCTACCTGGC GACGGGAACG
ACCGACTGGA CCACCGCCAC CGATGCGCAA TTCGAAGCGG CATCGGCCTG GCTGCGCGAG
GTCCATTCGA ACCTGCGCAC CTATTGGACC GACCCGGCGG AGCTGGCACA GCTTCTGGCC
ATGGGCGAGG TGCTGGTGGC CTGGGCCTGG AACGAAACGC TGCCGACCAT GACCGAAGAG
GGATTCCCCA TCGGCTATCA GCAGGAAGCT GCGGAAGGGT CCTCCCTTTG GCTGTGCGGC
TATGTGAACC TCGCCGAGGG CCAGGGGTCC GAAGACAAGG CCTATGATTT CATGAATGCG
ATGTTGGACC CATCCTCGAC CAGGCCTTTG CTGGAAGCGG GCTACGGGCA TTCCAACGCC
GCGGCCATGG CGCAGATCAG CGCCGAAGAA CTGGCCTCAG TCGGGTTGGG TGAGGTCAAC
GCGCCGGTGC TGGCACAACT GCCCATGAGC AAGGAGTTGC GCGAGAAGCA ATCGGCCACG
TTCGAGCGGA TCAAGGCCGG TTTCTGA
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| Protein sequence | MSTAFRLTAT TALAVLATPI SAADGDLIVF DYAGFELPEF HSAYVDAHGA SPEFTFFGDE
EEAFQKMVSG FRPDVSHVCA GSVTKWVASG LLEPWDTSRI PAFADLNADL TGQDVTEGTG
NTYFIPLDFG STGIAYNMDE VPAEDVASLD VFRNPKYAQR ITLPDNVDDA YALAYLATGT
TDWTTATDAQ FEAASAWLRE VHSNLRTYWT DPAELAQLLA MGEVLVAWAW NETLPTMTEE
GFPIGYQQEA AEGSSLWLCG YVNLAEGQGS EDKAYDFMNA MLDPSSTRPL LEAGYGHSNA
AAMAQISAEE LASVGLGEVN APVLAQLPMS KELREKQSAT FERIKAGF
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