Gene Dshi_2311 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_2311 
SymbolputA 
ID5713965 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp2439747 
End bp2443412 
Gene Length3666 bp 
Protein Length1221 aa 
Translation table11 
GC content64% 
IMG OID641268234 
Productbifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_001533648 
Protein GI159044854 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAGGG CGTTCGACAT ATCCAGTCAG ATCGACAATC CGTTTCGCGC CCAGGTGCGC 
GCGCATTACA CCGCCGAGGA AACCGCGCTT CTGAAATCTC TGGCCGCCCG CATCAAACTG
TCGGCACACG AACGCGAGAA GGCCGCCGCT GCCGGGGCCC GATACGTGAC AAGGGTCAGA
AACGAGACCA GGCCCTCTAT GATGGAGGCG TTTCTGGCCG AATATGGTCT CTCGACATCC
GAAGGCGTGG GCCTGATGTG CCTCGCCGAA GCGTTGCTGC GCGTCCCGGA TGCGGACACC
ATTGATGATC TGATCGAGGA CAAGGTTGCG CCATCGAACT GGGGCGCGCA TCTGGGCCAT
TCCTCGTCTT CTTTGGTGAA TGCATCGACC TGGGCGCTGA TGTTGACCGG CAAGGTTCTG
GATGAAGACC CCAGGGGGCC GGCGCGCGCC CTGCGCGGGC TGGTCAAGCG CCTGGGCGAG
CCGGTCGTGC GCACCGCTGT CGGCCAATCG ATGAAGGTGC TGGGACGACA ATTCGTTCTA
GGTCAGACCA TTGAGGAAGG CCTGAAGAAC GCCCGCGAGT TGGAAAAAAA GGGGTTCACC
TATTCCTACG ACATGCTTGG CGAAGCGGCC CGCACCGACG CCGATGCCAG GCGCTATCAT
GCCGCCTATG CCCAGGCAAT CACGGCAATT GCCAGGCAGG CCACGGGGGA TGTTCGCTCC
TCGCCCGGCA TCTCGGTCAA GTTGTCGGCC CTGCACCCAC GCTACGAATA CACCCACCGA
CATTCGGTGA TGGCAGACTT GGTGCCCCGC GCGGCGGCAC TGGTAAAACA AGCCGCCCAG
GCCGGTATCG GCTTCAATGT CGACGCAGAG GAACAGGACC GGCTCGATCT CTCGCTCGAT
GTGATCGAAG CGATGATGTC AGACCCGGAT CTCGACGGGT GGGACGGGTT CGGCGTTGTC
GTGCAAGCCT ATGGCCGCCG TGCCGGGCCC GTCATCGAGA CCCTGTATGA CATGGCAGAG
CGGTATGATC GGAAGATCAT GGTGCGGCTC GTCAAGGGCG CCTACTGGGA CACCGAGATC
AAACTGGCGC AGGAATTGGG GGTGGAACGG TTTCCGGTCT TTACCCGCAA GAACAATACC
GATGTGAGCT ATATGGCCTG TGCACAAATG CTGCTGGACC GGCGCGACCG AATCTATCCG
CAGTTTGCCA CCCACAACGC CCATACCTGT GCCGCCGTCT TGCAGATGGC CGGCAACGCC
AGAGACTGCT TCGAATTCCA GCGCCTGCAT GGAATGGGCG CGTCGCTGCA TCAGATCGTC
AAGGAGACCG AAGGCACCCG GTGCCGGATC TATGCGCCGG TCGGCGCGCA TCAGGATCTT
CTGGCCTATC TCGTCCGCCG CCTTCTCGAA AACGGGGCCA ACTCATCCTT TGTGAACCAG
ATCGTCGATC CCGACATCCC CGCCGAGGCG ATCTCCGCCG ATCCGGTATC CGAGATGGAG
AAGCTGGGCG ATCAGATCCC GAACCCGGCG ATCCGGCAAC CATCCGACCT CTTTGCCCCC
GACCGGCGCA ACTCCAGAGG CTACCGCGTC AACGAACCGG CATCGATCCT CCCGCTGATG
ACTGCGCGCG AAGCCTTCGC CGAGACCACC TGGCATGCAC GACCGATGCT GGCCGGGGGC
CGTGACCCGA CCGGGCCCAC GCGCGAGGTG CATTCGCCCG CGGACAAGAC CCGCCTTGTC
GGCACCGTTC AGGAGGCCTC CGCCGAGGAT GTCGCCTGCG CGCTCGATGC CGCCGAAACC
GGCTTCAGAG ACTGGTCGGC CCGGCCCGTG TCCGAGCGCG CCGATATGTT GCGCAAACTG
GCCGACATGT ACGAAGACAA CATCGCCGAA CTCACCGCGA TCACCACGCG CGAGGCCGGA
AAGACCGTCC TCGACGGCAT TGCCGAAGTG CGCGAAGCAG TTGATTTCCT GCGCTTCTAT
GCGAACGAGG CCGAACGTCT GGAAGAAGAG GATCCGGGCC GTCCGCGCGG TATCTTCGTC
TGCATCAGTC CTTGGAACTT CCCGCTGGCC ATCTTCACCG GCCAGATCGC GGCGGCTCTC
GTCATGGGCA ACGCGGTGCT GGCCAAACCG GCCGAACAGA CGCCGATCAT CGCCGCTCGC
GCGGTGCAGA TGATGCGCGA CTGCGGCCTG CCCGACGCCG CCCTCCAGCT TTTGCCCGGC
GACGGTCCAA TGGTTGGCGG TCCGCTGACC AGCGATCCGC GCATTGCCGG GGTCTGTTTC
ACAGGCTCCA CCGAAGTGGC GATGATCATC CACAAGGCAC TGGCGAAGAA CGCCGGACCA
GAGGCGGTTC TGGTCGCCGA AACCGGTGGT CTGAACGCGA TGATCGTCGA TTCCACCGCC
CTGCACGAAC AGGCCGTGCG CGATATCCTG ATCTCTTCGT TCCAGTCGGC TGGCCAGCGC
TGTTCCGCCC TGCGCATTCT CTACGTTCAG GAAGACGTGC ATGACAAGCT GATGGAGATG
CTGTCGGGCG CGCTCGATGC GCTGGTGATC GGCGACAGCT GGAACCTGGA TGTCGATGTG
TCCCCCGTGA TCGATGCCGA CGCCCAGAGC GATATCCTGG GCTATATCGA CCAGCACCGG
AAAGCGGGCA CCCTGATCAA GACGCTCGCC GCACCCGACA GCGGTACCTA TGTCACCCCG
GCCATCGTCA AGGTGGGCGG CATCGCGGAC ATGGAACGCG AAATCTTCGG CCCCGTTCTG
CATGTCGCGA CCTTCAAGGC GAACGAGATC GACCAGGTGG TGGACGCCAT CAATGCGCGC
CGCTACGGCC TGACTTTCGG CCTTCACACG CGGATCGACG ACCGGGTCGA ACAGATCGTC
GAACGAATCC AGGTCGGCAA TGTCTACGTC AACCGCAACC AGATCGGCGC CATCGTGGGC
AGTCAGCCCT TTGGCGGCGA AGGGCTTTCG GGAACCGGTC CGAAGGCGGG AGGGCCGCTT
TACCTGACCC GCTTCCGCAA GGTCGGAAAG TCCACCAGCC ATCCCGCCCC GCAAGGGGCT
GTGCTCGGCA AAGCGGCACT GAACACGGCC CTGTCGTCGC TCGATGCGCG AAACTGGGCC
GCACGGCCGG ACCGGGTGCA CATCTTGCGC ATGGCGCTCA GTGGCAGTAC CGGCGTGGTG
CGCCGCGCCT TGTCGGAAAC GGCGGCCTTC GACATGTCCC CGCAGACGCT GCCGGGGCCG
ACCGGCGAGA GTAACCGCCT GAGCATGGTC CCGCGCGGCA CGGTCCTGTG CCTCGGCCCC
ACCCCGGAAA TCGCGATGGC CCAGGCGGTG CAGGCACTTG GCGCAGGATG CGCGGTGGTG
ATTGCCCTGC CCGGCAGCAC GCCCCTGTCC CAACCGCTCT CCGACGCGGG CGCCCCTGTC
GTGACCCTCG ACGGCACGGT CGACTGTGTA ACCCTGACAG AGCTCACAGG CATAGAGGTC
GTCGCCGCTG CCGGCGCTTC GGATTGGACG CGCACCCTGC GGGTCGCCTT GTCCCAACGC
GACGGACCAA TCATCCCGCT GATCGTCGAC GAAATCGCGC CCGAGCGGTA CGTGCTCGAA
CGCCACCTGT GCATCGACAC GACGGCGGCA GGCGGCAATG CCAAATTGCT GGCCGCCTCG
TCGTGA
 
Protein sequence
MNRAFDISSQ IDNPFRAQVR AHYTAEETAL LKSLAARIKL SAHEREKAAA AGARYVTRVR 
NETRPSMMEA FLAEYGLSTS EGVGLMCLAE ALLRVPDADT IDDLIEDKVA PSNWGAHLGH
SSSSLVNAST WALMLTGKVL DEDPRGPARA LRGLVKRLGE PVVRTAVGQS MKVLGRQFVL
GQTIEEGLKN ARELEKKGFT YSYDMLGEAA RTDADARRYH AAYAQAITAI ARQATGDVRS
SPGISVKLSA LHPRYEYTHR HSVMADLVPR AAALVKQAAQ AGIGFNVDAE EQDRLDLSLD
VIEAMMSDPD LDGWDGFGVV VQAYGRRAGP VIETLYDMAE RYDRKIMVRL VKGAYWDTEI
KLAQELGVER FPVFTRKNNT DVSYMACAQM LLDRRDRIYP QFATHNAHTC AAVLQMAGNA
RDCFEFQRLH GMGASLHQIV KETEGTRCRI YAPVGAHQDL LAYLVRRLLE NGANSSFVNQ
IVDPDIPAEA ISADPVSEME KLGDQIPNPA IRQPSDLFAP DRRNSRGYRV NEPASILPLM
TAREAFAETT WHARPMLAGG RDPTGPTREV HSPADKTRLV GTVQEASAED VACALDAAET
GFRDWSARPV SERADMLRKL ADMYEDNIAE LTAITTREAG KTVLDGIAEV REAVDFLRFY
ANEAERLEEE DPGRPRGIFV CISPWNFPLA IFTGQIAAAL VMGNAVLAKP AEQTPIIAAR
AVQMMRDCGL PDAALQLLPG DGPMVGGPLT SDPRIAGVCF TGSTEVAMII HKALAKNAGP
EAVLVAETGG LNAMIVDSTA LHEQAVRDIL ISSFQSAGQR CSALRILYVQ EDVHDKLMEM
LSGALDALVI GDSWNLDVDV SPVIDADAQS DILGYIDQHR KAGTLIKTLA APDSGTYVTP
AIVKVGGIAD MEREIFGPVL HVATFKANEI DQVVDAINAR RYGLTFGLHT RIDDRVEQIV
ERIQVGNVYV NRNQIGAIVG SQPFGGEGLS GTGPKAGGPL YLTRFRKVGK STSHPAPQGA
VLGKAALNTA LSSLDARNWA ARPDRVHILR MALSGSTGVV RRALSETAAF DMSPQTLPGP
TGESNRLSMV PRGTVLCLGP TPEIAMAQAV QALGAGCAVV IALPGSTPLS QPLSDAGAPV
VTLDGTVDCV TLTELTGIEV VAAAGASDWT RTLRVALSQR DGPIIPLIVD EIAPERYVLE
RHLCIDTTAA GGNAKLLAAS S