Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_2311 |
Symbol | putA |
ID | 5713965 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 2439747 |
End bp | 2443412 |
Gene Length | 3666 bp |
Protein Length | 1221 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641268234 |
Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_001533648 |
Protein GI | 159044854 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACAGGG CGTTCGACAT ATCCAGTCAG ATCGACAATC CGTTTCGCGC CCAGGTGCGC GCGCATTACA CCGCCGAGGA AACCGCGCTT CTGAAATCTC TGGCCGCCCG CATCAAACTG TCGGCACACG AACGCGAGAA GGCCGCCGCT GCCGGGGCCC GATACGTGAC AAGGGTCAGA AACGAGACCA GGCCCTCTAT GATGGAGGCG TTTCTGGCCG AATATGGTCT CTCGACATCC GAAGGCGTGG GCCTGATGTG CCTCGCCGAA GCGTTGCTGC GCGTCCCGGA TGCGGACACC ATTGATGATC TGATCGAGGA CAAGGTTGCG CCATCGAACT GGGGCGCGCA TCTGGGCCAT TCCTCGTCTT CTTTGGTGAA TGCATCGACC TGGGCGCTGA TGTTGACCGG CAAGGTTCTG GATGAAGACC CCAGGGGGCC GGCGCGCGCC CTGCGCGGGC TGGTCAAGCG CCTGGGCGAG CCGGTCGTGC GCACCGCTGT CGGCCAATCG ATGAAGGTGC TGGGACGACA ATTCGTTCTA GGTCAGACCA TTGAGGAAGG CCTGAAGAAC GCCCGCGAGT TGGAAAAAAA GGGGTTCACC TATTCCTACG ACATGCTTGG CGAAGCGGCC CGCACCGACG CCGATGCCAG GCGCTATCAT GCCGCCTATG CCCAGGCAAT CACGGCAATT GCCAGGCAGG CCACGGGGGA TGTTCGCTCC TCGCCCGGCA TCTCGGTCAA GTTGTCGGCC CTGCACCCAC GCTACGAATA CACCCACCGA CATTCGGTGA TGGCAGACTT GGTGCCCCGC GCGGCGGCAC TGGTAAAACA AGCCGCCCAG GCCGGTATCG GCTTCAATGT CGACGCAGAG GAACAGGACC GGCTCGATCT CTCGCTCGAT GTGATCGAAG CGATGATGTC AGACCCGGAT CTCGACGGGT GGGACGGGTT CGGCGTTGTC GTGCAAGCCT ATGGCCGCCG TGCCGGGCCC GTCATCGAGA CCCTGTATGA CATGGCAGAG CGGTATGATC GGAAGATCAT GGTGCGGCTC GTCAAGGGCG CCTACTGGGA CACCGAGATC AAACTGGCGC AGGAATTGGG GGTGGAACGG TTTCCGGTCT TTACCCGCAA GAACAATACC GATGTGAGCT ATATGGCCTG TGCACAAATG CTGCTGGACC GGCGCGACCG AATCTATCCG CAGTTTGCCA CCCACAACGC CCATACCTGT GCCGCCGTCT TGCAGATGGC CGGCAACGCC AGAGACTGCT TCGAATTCCA GCGCCTGCAT GGAATGGGCG CGTCGCTGCA TCAGATCGTC AAGGAGACCG AAGGCACCCG GTGCCGGATC TATGCGCCGG TCGGCGCGCA TCAGGATCTT CTGGCCTATC TCGTCCGCCG CCTTCTCGAA AACGGGGCCA ACTCATCCTT TGTGAACCAG ATCGTCGATC CCGACATCCC CGCCGAGGCG ATCTCCGCCG ATCCGGTATC CGAGATGGAG AAGCTGGGCG ATCAGATCCC GAACCCGGCG ATCCGGCAAC CATCCGACCT CTTTGCCCCC GACCGGCGCA ACTCCAGAGG CTACCGCGTC AACGAACCGG CATCGATCCT CCCGCTGATG ACTGCGCGCG AAGCCTTCGC CGAGACCACC TGGCATGCAC GACCGATGCT GGCCGGGGGC CGTGACCCGA CCGGGCCCAC GCGCGAGGTG CATTCGCCCG CGGACAAGAC CCGCCTTGTC GGCACCGTTC AGGAGGCCTC CGCCGAGGAT GTCGCCTGCG CGCTCGATGC CGCCGAAACC GGCTTCAGAG ACTGGTCGGC CCGGCCCGTG TCCGAGCGCG CCGATATGTT GCGCAAACTG GCCGACATGT ACGAAGACAA CATCGCCGAA CTCACCGCGA TCACCACGCG CGAGGCCGGA AAGACCGTCC TCGACGGCAT TGCCGAAGTG CGCGAAGCAG TTGATTTCCT GCGCTTCTAT GCGAACGAGG CCGAACGTCT GGAAGAAGAG GATCCGGGCC GTCCGCGCGG TATCTTCGTC TGCATCAGTC CTTGGAACTT CCCGCTGGCC ATCTTCACCG GCCAGATCGC GGCGGCTCTC GTCATGGGCA ACGCGGTGCT GGCCAAACCG GCCGAACAGA CGCCGATCAT CGCCGCTCGC GCGGTGCAGA TGATGCGCGA CTGCGGCCTG CCCGACGCCG CCCTCCAGCT TTTGCCCGGC GACGGTCCAA TGGTTGGCGG TCCGCTGACC AGCGATCCGC GCATTGCCGG GGTCTGTTTC ACAGGCTCCA CCGAAGTGGC GATGATCATC CACAAGGCAC TGGCGAAGAA CGCCGGACCA GAGGCGGTTC TGGTCGCCGA AACCGGTGGT CTGAACGCGA TGATCGTCGA TTCCACCGCC CTGCACGAAC AGGCCGTGCG CGATATCCTG ATCTCTTCGT TCCAGTCGGC TGGCCAGCGC TGTTCCGCCC TGCGCATTCT CTACGTTCAG GAAGACGTGC ATGACAAGCT GATGGAGATG CTGTCGGGCG CGCTCGATGC GCTGGTGATC GGCGACAGCT GGAACCTGGA TGTCGATGTG TCCCCCGTGA TCGATGCCGA CGCCCAGAGC GATATCCTGG GCTATATCGA CCAGCACCGG AAAGCGGGCA CCCTGATCAA GACGCTCGCC GCACCCGACA GCGGTACCTA TGTCACCCCG GCCATCGTCA AGGTGGGCGG CATCGCGGAC ATGGAACGCG AAATCTTCGG CCCCGTTCTG CATGTCGCGA CCTTCAAGGC GAACGAGATC GACCAGGTGG TGGACGCCAT CAATGCGCGC CGCTACGGCC TGACTTTCGG CCTTCACACG CGGATCGACG ACCGGGTCGA ACAGATCGTC GAACGAATCC AGGTCGGCAA TGTCTACGTC AACCGCAACC AGATCGGCGC CATCGTGGGC AGTCAGCCCT TTGGCGGCGA AGGGCTTTCG GGAACCGGTC CGAAGGCGGG AGGGCCGCTT TACCTGACCC GCTTCCGCAA GGTCGGAAAG TCCACCAGCC ATCCCGCCCC GCAAGGGGCT GTGCTCGGCA AAGCGGCACT GAACACGGCC CTGTCGTCGC TCGATGCGCG AAACTGGGCC GCACGGCCGG ACCGGGTGCA CATCTTGCGC ATGGCGCTCA GTGGCAGTAC CGGCGTGGTG CGCCGCGCCT TGTCGGAAAC GGCGGCCTTC GACATGTCCC CGCAGACGCT GCCGGGGCCG ACCGGCGAGA GTAACCGCCT GAGCATGGTC CCGCGCGGCA CGGTCCTGTG CCTCGGCCCC ACCCCGGAAA TCGCGATGGC CCAGGCGGTG CAGGCACTTG GCGCAGGATG CGCGGTGGTG ATTGCCCTGC CCGGCAGCAC GCCCCTGTCC CAACCGCTCT CCGACGCGGG CGCCCCTGTC GTGACCCTCG ACGGCACGGT CGACTGTGTA ACCCTGACAG AGCTCACAGG CATAGAGGTC GTCGCCGCTG CCGGCGCTTC GGATTGGACG CGCACCCTGC GGGTCGCCTT GTCCCAACGC GACGGACCAA TCATCCCGCT GATCGTCGAC GAAATCGCGC CCGAGCGGTA CGTGCTCGAA CGCCACCTGT GCATCGACAC GACGGCGGCA GGCGGCAATG CCAAATTGCT GGCCGCCTCG TCGTGA
|
Protein sequence | MNRAFDISSQ IDNPFRAQVR AHYTAEETAL LKSLAARIKL SAHEREKAAA AGARYVTRVR NETRPSMMEA FLAEYGLSTS EGVGLMCLAE ALLRVPDADT IDDLIEDKVA PSNWGAHLGH SSSSLVNAST WALMLTGKVL DEDPRGPARA LRGLVKRLGE PVVRTAVGQS MKVLGRQFVL GQTIEEGLKN ARELEKKGFT YSYDMLGEAA RTDADARRYH AAYAQAITAI ARQATGDVRS SPGISVKLSA LHPRYEYTHR HSVMADLVPR AAALVKQAAQ AGIGFNVDAE EQDRLDLSLD VIEAMMSDPD LDGWDGFGVV VQAYGRRAGP VIETLYDMAE RYDRKIMVRL VKGAYWDTEI KLAQELGVER FPVFTRKNNT DVSYMACAQM LLDRRDRIYP QFATHNAHTC AAVLQMAGNA RDCFEFQRLH GMGASLHQIV KETEGTRCRI YAPVGAHQDL LAYLVRRLLE NGANSSFVNQ IVDPDIPAEA ISADPVSEME KLGDQIPNPA IRQPSDLFAP DRRNSRGYRV NEPASILPLM TAREAFAETT WHARPMLAGG RDPTGPTREV HSPADKTRLV GTVQEASAED VACALDAAET GFRDWSARPV SERADMLRKL ADMYEDNIAE LTAITTREAG KTVLDGIAEV REAVDFLRFY ANEAERLEEE DPGRPRGIFV CISPWNFPLA IFTGQIAAAL VMGNAVLAKP AEQTPIIAAR AVQMMRDCGL PDAALQLLPG DGPMVGGPLT SDPRIAGVCF TGSTEVAMII HKALAKNAGP EAVLVAETGG LNAMIVDSTA LHEQAVRDIL ISSFQSAGQR CSALRILYVQ EDVHDKLMEM LSGALDALVI GDSWNLDVDV SPVIDADAQS DILGYIDQHR KAGTLIKTLA APDSGTYVTP AIVKVGGIAD MEREIFGPVL HVATFKANEI DQVVDAINAR RYGLTFGLHT RIDDRVEQIV ERIQVGNVYV NRNQIGAIVG SQPFGGEGLS GTGPKAGGPL YLTRFRKVGK STSHPAPQGA VLGKAALNTA LSSLDARNWA ARPDRVHILR MALSGSTGVV RRALSETAAF DMSPQTLPGP TGESNRLSMV PRGTVLCLGP TPEIAMAQAV QALGAGCAVV IALPGSTPLS QPLSDAGAPV VTLDGTVDCV TLTELTGIEV VAAAGASDWT RTLRVALSQR DGPIIPLIVD EIAPERYVLE RHLCIDTTAA GGNAKLLAAS S
|
| |