| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2287 |
|---|
| Symbol | |
|---|
| ID | 5713941 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 2415315 |
|---|
| End bp | 2417234 |
|---|
| Gene Length | 1920 bp |
|---|
| Protein Length | 639 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641268210 |
|---|
| Product | putative TRAP transporter |
|---|
| Protein accession | YP_001533624 |
|---|
| Protein GI | 159044830 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
|---|
| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAGC CGGCGACCAT ACCAGTCGCG AACCCGGCGC CGGCCGGCGG GCTAGGTGCA
CCCCTGGGCG GGCTTTTCGC GCTGTTGGTG ATCTGTGTGA TCGCCTTTGC AACTCTCGAT
GAGGCCACGG CCCGGTTCGG GGCGATCGCG CTATCCGTGG CTATTGTGGG TCTGGCACAC
CCCGCCAGGC GTGGCAGGCC GTCGGGGCGG GCGGTCGACG CTGCTCTCCT GGCCGGTTTC
GGCTGCGCGG GTTGGTGGTT TCACGCGGTC AAGGCGGAAT TGTGGACCGG GTTTTTCGTG
GCGACGCCTT TGTCCGTGCT CGCGGGTCTG GCCGGGGTTT TCACCGTGAT CGTGCTGGCA
GCACGGGTTT GGGGCAGATC GCTGGCGATT CTCGCCGGGG CCTTGATCCT CTATGCCTTC
GGCGGGCCTT ACCTGCCCAA CGCGGTCGCC CATTTCGGCG TAGGCTTGGG CGATTTCGTG
CAAATCACGT GGTACTCCTT CGACGGGGTC TTCGGGCGAA TGACCGGTCT GGTTGCCAGT
AACCTGCTGA TTTTCCTAAT CCTGGGTGCG GTGCTGCAGC AAACGGGCGC AGGCGAGAGC
CTGATCCGGC TGTCAACGGC ACTGCTTGGG CGGGTGCGCG GCGGCGGGGC CCATGCCGCC
ATTGCTGCCA GCGCGGTCTT CGGCATGATG AACGGCTCCG TTGCCGCGAA CATCGCGGGC
ACGGGCGTTT TCACCATTCC GATGATCAAG CGGCAGGGGT TTTCAAGCCG CTTTGCCGGA
GCGGTCGAGG CCGCGGCGTC CTCAGGCGGG CAACTTACCC CGCCCATCAT GGCCGCCACG
GTCTTCGTGA TGGCCGACCT CGTTGGGCTG CCGCTGCTGA TGGTGATTGC TGCCGCCGCC
CTGCCCGCCC TGTTCAAATA TCTCGGCCTT TTCGCGCAGG TCTATGTGGA GGCCTTGCGC
TTGGATATCC GCCCCCTGGC TGCCGAGGAT ATTCCCAAGC TCACGCGGCA GGACTGGCTG
CAATCGGCCC TCGTTCTGGT GCCGCTTGCC GTACTGATGA TCGCGTTCCT GTCAGGCAGC
TCACCCGCCA TGGCGGGGCT TGCCGGTACG ATCGCGGCCC TTGTGACGGG CCTTGTGTTG
ACGCCCCAGC TCCGGCAGCA ACCGATCCGG ATCTGGTGGG CGCTCTGTGC AGGCGGGCTC
GCGTCGGCAC GGATCCTGCT ATCGGTTGCG GTCATCGGGA TAGTGCTGGC CGTGGTAAAC
GAGACCGGCA TCGCGATCCG CTTCGCTGTC GCGCTCTCCG AGGTCGGCGA TGCCTATCTG
CCCCTGGCAT TACTGATGGC GATGCTTGGG GCGCTTGTCC TCGGGATGGG GTTGCCGACA
CTGCCGGCCT ACCTGATCGT CGCGATCATG ATCGTACCAA CGCTCATTGA GGCAGGCGTT
CTGCCCCTCG CCGCGCATAT GTTCGTTCTG TACTTCGCGG TGTTTTCCTC GATCATGCCA
CCCATTGCCT ATGGCTGTTT CGTGGCGGCC CCTATTGCGG GGGCGGATGC CTTGCGGATC
TCGTTCACCG CGCTGCGGAT TTCGATCGTC GGCTTGATCG TGCCTTTCGC GTTCGTCTAT
GCGCCGTCGC TCTTGCTGGT GGCGGGCAGC TTCAGTTGGG CGGAGCTTCT GACCACGGCG
CTGCGCCTGT CATTGGCCAG TTGGCTGCTT GCCACTGCTC TGGGCGGCGC GGACCCGGTG
CTGGGACGTT TGCCGCGGCA CAATCGCATG CTGCGCGGGG GCGCCGCCTG CGCCGTGATG
GTGCCGACGG TCGCCCTCTG GGGCCCCGGG CTGGCCTTGG GCATCGCTAT GGGGGTGCTG
CACCCCCTGC ACCGGGCGGG CTGGATCAAG CGGGTCTCCC TGCGGGCGCA TGGCACATGA
|
|---|
| Protein sequence | MNQPATIPVA NPAPAGGLGA PLGGLFALLV ICVIAFATLD EATARFGAIA LSVAIVGLAH
PARRGRPSGR AVDAALLAGF GCAGWWFHAV KAELWTGFFV ATPLSVLAGL AGVFTVIVLA
ARVWGRSLAI LAGALILYAF GGPYLPNAVA HFGVGLGDFV QITWYSFDGV FGRMTGLVAS
NLLIFLILGA VLQQTGAGES LIRLSTALLG RVRGGGAHAA IAASAVFGMM NGSVAANIAG
TGVFTIPMIK RQGFSSRFAG AVEAAASSGG QLTPPIMAAT VFVMADLVGL PLLMVIAAAA
LPALFKYLGL FAQVYVEALR LDIRPLAAED IPKLTRQDWL QSALVLVPLA VLMIAFLSGS
SPAMAGLAGT IAALVTGLVL TPQLRQQPIR IWWALCAGGL ASARILLSVA VIGIVLAVVN
ETGIAIRFAV ALSEVGDAYL PLALLMAMLG ALVLGMGLPT LPAYLIVAIM IVPTLIEAGV
LPLAAHMFVL YFAVFSSIMP PIAYGCFVAA PIAGADALRI SFTALRISIV GLIVPFAFVY
APSLLLVAGS FSWAELLTTA LRLSLASWLL ATALGGADPV LGRLPRHNRM LRGGAACAVM
VPTVALWGPG LALGIAMGVL HPLHRAGWIK RVSLRAHGT
|
|---|
| |