| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2273 |
|---|
| Symbol | |
|---|
| ID | 5713926 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 2395765 |
|---|
| End bp | 2397051 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641268195 |
|---|
| Product | homoserine dehydrogenase |
|---|
| Protein accession | YP_001533610 |
|---|
| Protein GI | 159044816 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0460] Homoserine dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTCCC CTCTTCGCCT TGGTATCGCC GGGCTCGGCA CGGTGGGTGC CGGTGTGGTC
AAGATCATCT CGCGCAAACA GGAGCTTCTG GCCGCGCGCG CTGGACGTCC CATCGAGGTC
ACCGCCGTGT CAGCGCGCAG CCGCGACAAG GACCGAGGCG TGGATATGTC CACCTATGGC
TGGGAGAATG ACCCCGTAGC TTTGGCGCGG CGCGATGACG TCGACGTGTT TGTCGAGTTG
ATGGGCGGCG AGGACGGCCC GGCCAGGAAC GCAACCGAAG CGGCGCTGGC GGCGGGTAAG
GACGTGGTGA CCGCCAACAA GGCGATGCTG GCCCATCACG GCCAGGCCCT CGCCATGGCC
GCAGAGGACG CCGGGCGCGT GATCCGCTTC GAGGCGGCGG TTGCCGGCGG AATTCCGGTC
ATCAAGGCGC TGACCGAGGG GCTGGCCGGG AACGAGATCA CCCGCGTGAT GGGTGTGATG
AACGGCACCT GCAACTACAT CCTGACCCGG ATGGAGGCCG AGGGGCTCGG CTACAACATC
TTGTTCGAAG AGGCCGGGAA GCTGGGCTAT CTCGAGGCCG ATCCGACGCT CGATGTGGGC
GGGATCGATG CGGCACATAA GCTGGCGCTG CTGGCCTCCA TCGCCTTCGG CACAAAGGTG
GATTTCGACG GTGTGGAGTT GGAAGGGATC GAGCAGGTTA CCCTTGAAGA TATCCGGCAT
GCGGCCGACA TGGGATTTCG GATCAAGCTG CTCGGCGTAG CCCAGCGCAG TGGTCGCGGG
CTGGAGCAGC GCATGCGTCC CTGCCTTGTG CCGGCAAGTT CCCCGCTGGG GCAGTTGGAG
GGCGGCACGA ACATGGTGGT GATCGAGGGC GACCAGGTCG GACAGGTCGT GCTCCGCGGG
GCCGGCGCTG GCGAAGGTCC GACCGCCTCG GCGGTTCTAT CGGACATCAT GGACATCGCG
CGTGGCGACC GAATTTCCAC GTTCGGCCAG CCGGCCTCGG GCTTGGTAAC GCCGATCCGG
GCACAATCCG CGGTGGCGGC GCCCTACTAC CTGCGGATGG AGTTGGAAGA CAAACCGGGC
GCCTTGGCCA AGGTTGCGAC AGTCCTCGGG GATTCGGGCG TGTCCATCGA CCGGATGCGT
CAGTACGGGC ACGAATCCTC CTCTGCGCCG GTGCTGATCG TGACCCACAA GGCAGCTCGG
AACGCCGTGG ATGCCGCGCT CGAGGCATTG CCGAAGACAG GCGTCGTTCT CGGCACGCCC
GTTGCTCTGC GCATCGAAGC AGTTTGA
|
|---|
| Protein sequence | MSSPLRLGIA GLGTVGAGVV KIISRKQELL AARAGRPIEV TAVSARSRDK DRGVDMSTYG
WENDPVALAR RDDVDVFVEL MGGEDGPARN ATEAALAAGK DVVTANKAML AHHGQALAMA
AEDAGRVIRF EAAVAGGIPV IKALTEGLAG NEITRVMGVM NGTCNYILTR MEAEGLGYNI
LFEEAGKLGY LEADPTLDVG GIDAAHKLAL LASIAFGTKV DFDGVELEGI EQVTLEDIRH
AADMGFRIKL LGVAQRSGRG LEQRMRPCLV PASSPLGQLE GGTNMVVIEG DQVGQVVLRG
AGAGEGPTAS AVLSDIMDIA RGDRISTFGQ PASGLVTPIR AQSAVAAPYY LRMELEDKPG
ALAKVATVLG DSGVSIDRMR QYGHESSSAP VLIVTHKAAR NAVDAALEAL PKTGVVLGTP
VALRIEAV
|
|---|
| |