| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2264 |
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| Symbol | |
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| ID | 5713917 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2386296 |
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| End bp | 2389238 |
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| Gene Length | 2943 bp |
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| Protein Length | 980 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641268186 |
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| Product | putative sarcosine oxidase |
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| Protein accession | YP_001533601 |
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| Protein GI | 159044807 |
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| COG category | [E] Amino acid transport and metabolism
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0492] Thioredoxin reductase |
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| TIGRFAM ID | [TIGR01372] sarcosine oxidase, alpha subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.710125 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGCTCG ATGGTGCGGG CCTGATCGAC CGGGACACGC CGCTGCGCTT TCAGTTCGAC
GACCGTTGGA TGGGCGGGTT TGCGGGGGAC ACGCTGGCCT CGGCTTTGAT GGCGAACGGG
GTAAAGCTGG TCGCTCGGTC CTTCAAGTAC CACCGCCCCC GGGGCATCTG GTCGGCGGGT
TCCGAAGAGC CCAACGCTTT GGTGCAGGTG GGCAAATTCG CGCGCCAGGT GCCGAATGTG
CGTGCGACGC AGGCCGAACT TTTTGAGGGT CTCTACGCCA CCAGCCAGAA CCGGTGGCCG
TCGCTGACCC TCGACCTGCT GTCGTTGAAT GATCTGGCGG CGCCCTTCCT CGGGGCGGGG
TTCTATTACA AGACCTTCAT GTGGCCGCGC AGCTTCTGGG AAAAGCTCTA TGAGCCCGCA
ATTCGGCGGG CGGCAGGGTT GGGTGCCCTG TCGGGTCAGA CCAACACCGA GCCCTACGAG
AAGGCCTATG CCCATTGCGA CCTGCTGGTG ATCGGCGCCG GGCCTGCGGG GCTGATGGCG
GCCCTGACCG CGGCCCGGGC GGGTGCGGAT GTGATCTTGG CAGAGGAGGG TGACCGTTGT
GGCGGGCGGC TCCTTTCCGA GCAGGAGGAA GTCGACGGGG CCTCAGGGCA GGATTGGGTG
AGCCGGATAG TGGCGGAGTT GGTGACGAGT GGGCGGGTCC GGGTCATGAC CCGCACCACG
GTGACCGGGG CCTATGACGG CGGCATTTAC GGAGCGCTGG AGCGGGTGGG CCTGCACCTG
GCCGACCCGG CGCCCGCCCT GCCGCGGGAG TGTTTCTGGC GCATCTCGGC GCGGCGCGCG
ATCCTGTGCG CCGGCGCGTC CGAACGGCCC ATCGCCTTTC CGATGAACGA CCGTCCCGGC
ATCCTGTCAG CCGCAGCCCT GCGAACCTAC GCCAACCGTT ATCGCACTGT GCCGGGGCCG
CGCGTGGCGC TCTTTTGCAA CAATGACGAT GCGTACCGCA CGGCTCGGGA CCTTGTCGCC
AGCGGGGTCG AGGTGGCTGC CGTGGTGGAT ACCCGCGCCG AGACGCCCGA GGGCGACTAC
CCGGTTTTCC GGGAGGCACG CGTGGTTGAC ACCAGGGGCC GCCATGGCCT GCGCCGGATC
ACCGTCGATG GCCCGGACGG ACGGCGGCAG ATCGAGGTGG ACGCCCTTGG CGTCTCTGGC
GGCTGGAACC CGAATCTGCA TCTGACCTGC CACATGTACG GGCGCCCCAC CTGGAACCCT
GCGCTGCATG CTTTCGTGCC TACGCCTGGG GCGGTGCCAG GTCTCGATGT GGCCGGGGCG
GCCGCGGGGG TGTTTTCCAC CCATGGAGCC TTGAAATCGG GAGTGTTCCG GGCGCGCAAG
GCGTTGGAGT CGCTGGAGCT GGCACCGTCC TCCATGCCCA TCCCGCAGGC AGATGACGCG
CCTTACGTCC TCTCGCCGAT CTATGCGGTC GACGGTGCCA AGGGCGCACG GGGCCGAGCC
TGGCTCGACT TCCAGAACGA TGTGACCGTC AAGGATGTCC GACAGGCCGC GTCCGAGAAC
ATGACCAGCG TCGAGCACAT GAAGCGTTAC ACCACCCAAG GCATGGCCAC GGATCAGGGC
AGGGTGTCGA ATGTGCTGGC GCTTTCGGTG CTCGCCGATG CCACGGGGCG GGGCATCCCA
GAGACCGGGA CAACCACCTT CCGCCCGCCC TATACGCCCG TTTCCCTCGC CGCGCTGGGC
GCAGGGGCGC AGGGCAAGGG GTTCGCGCCG GAGCGGCTGA CCACGTCTCA TGCAGGCAGC
CTCGCGCGCG GTGCACCCAT GGTCGAAGCC GGTCTGTGGT ATCGCCCGAG CTACTTCCCC
AGAGACGGCG AGACGACCTG GCGCGAAGCT TGCGACCGGG AGGTCGGCCA TGTTCGCAGT
GCGGTCGGGG TGTGCGATGT CTCCACCCTC GGCAAGATCG AGTTGCAGGG CCCCGATGCG
GGGGCGTTTC TCGACCTGGT CTATGCCAAC ACCTTCTCGA CCCTGAAACC GGGGCGCGTG
CGCTACGGGG TGATGCTGCG CGAGGACGGG CATGTGATGG ATGACGGCAC GACAGCCTGT
CTCGGGCCGG GGCACTATGT GATGACAACA ACAACCGTCG CAGCGCACAA GGTCATGCAG
CATCTTGAAT TCGTGCAGCA ATGCCTGGTG CCGACGATGC GGGTGCGCTT TACCTCCGTC
ACCGAGAATT GGGCGCAATT CGCCGTGGCG GGGCCGCAAG CCCGCGCGTT GCTCAACGAT
CTGCTGGACG CGCCGGTGAG GAATGCCAAC TTTCCGTTCA TGGCCTGTGG GGCGGTGCGG
TTGGGGGGTG TGGGTGGTCG TTTGTTCCGC ATCTCGTTCT CGGGAGAACA CGCCTATGAA
GTCGCTATCC CGGCCCGCTA CGGTGCTGCG CTGTTCGAGC AACTGGTTGC CCGGGCCGAG
GCCATGGGCG GCGGAGCCTA CGGGATGGAG GCGCTCAACG TGCTGCGGAT CGAAAAGGGG
TTCGTGACCC ATGCGGAGAT CCACGGCCGC GTCACCGCGG ACGATGTCGG GCTGGGGCGG
ATGGTGTCAG CCAAGAAGGA CTGCATCGGC AAGACCGCCA GTCAGCGCCC GGGCCTGACC
GACCCAGACC GGGAGCAACT TGTGGGCCTG CGGCCCTGCG ACGGGCGGAC CGCTTTGTTG
GCCGGGGCGC ACCTGTTCGA GCCCGGGGCA GAGGCGGTGC GGGTCACCGA CCAGGGCTAC
GTGACTAGCG TGTGTTTCTC ACCGACGCTA CAGACGCCTA TTGGGCTCGG CTTCCTGCGC
CGAGGTCGGG CACGGCATGG GCAGCGGGTG ATGATGATCG ATCACTTGCG GGGGGTGACC
ACTGAGTGTG AGGTGACGGA TCCCGTGTTC TTTGATCCCG ACGGAGGGCG CGCCCGTGGC
TGA
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| Protein sequence | MRLDGAGLID RDTPLRFQFD DRWMGGFAGD TLASALMANG VKLVARSFKY HRPRGIWSAG
SEEPNALVQV GKFARQVPNV RATQAELFEG LYATSQNRWP SLTLDLLSLN DLAAPFLGAG
FYYKTFMWPR SFWEKLYEPA IRRAAGLGAL SGQTNTEPYE KAYAHCDLLV IGAGPAGLMA
ALTAARAGAD VILAEEGDRC GGRLLSEQEE VDGASGQDWV SRIVAELVTS GRVRVMTRTT
VTGAYDGGIY GALERVGLHL ADPAPALPRE CFWRISARRA ILCAGASERP IAFPMNDRPG
ILSAAALRTY ANRYRTVPGP RVALFCNNDD AYRTARDLVA SGVEVAAVVD TRAETPEGDY
PVFREARVVD TRGRHGLRRI TVDGPDGRRQ IEVDALGVSG GWNPNLHLTC HMYGRPTWNP
ALHAFVPTPG AVPGLDVAGA AAGVFSTHGA LKSGVFRARK ALESLELAPS SMPIPQADDA
PYVLSPIYAV DGAKGARGRA WLDFQNDVTV KDVRQAASEN MTSVEHMKRY TTQGMATDQG
RVSNVLALSV LADATGRGIP ETGTTTFRPP YTPVSLAALG AGAQGKGFAP ERLTTSHAGS
LARGAPMVEA GLWYRPSYFP RDGETTWREA CDREVGHVRS AVGVCDVSTL GKIELQGPDA
GAFLDLVYAN TFSTLKPGRV RYGVMLREDG HVMDDGTTAC LGPGHYVMTT TTVAAHKVMQ
HLEFVQQCLV PTMRVRFTSV TENWAQFAVA GPQARALLND LLDAPVRNAN FPFMACGAVR
LGGVGGRLFR ISFSGEHAYE VAIPARYGAA LFEQLVARAE AMGGGAYGME ALNVLRIEKG
FVTHAEIHGR VTADDVGLGR MVSAKKDCIG KTASQRPGLT DPDREQLVGL RPCDGRTALL
AGAHLFEPGA EAVRVTDQGY VTSVCFSPTL QTPIGLGFLR RGRARHGQRV MMIDHLRGVT
TECEVTDPVF FDPDGGRARG
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