| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2261 |
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| Symbol | rpoD |
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| ID | 5713914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2381601 |
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| End bp | 2383595 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641268183 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001533598 |
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| Protein GI | 159044804 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.435799 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCCGCCA AAGACACTGA CGACCGCAAG ACCGATGACC AGGACGCCGA GGCAATGCTC
GACATGAGCC AAGCGGCGGT CAAAAAGATG ATCGCCGAAG CCCGGACGCG CGGCTACATA
ACCTACGATC AGCTTAATCA GGTTCTGCCG CCGGATCAGG TCAGCTCGGA ACAGATCGAG
GACGTGATGT CCATGCTGTC CGAGATGGGC ATCAACATCA TCGAGGAAGA CGAGGCCGAG
GACGGCGATG CGCCCGCGAA TGCATCGACG CAGGTCGTCG AATCCTCCAG TTCCCGCGAA
GTAGCGGTCT CTACCTCCTC GTCGGAGACG CTCGACCGCA CCGACGACCC GGTCCGGATG
TATCTGCGCG AGATGGGGTC TGTCGAACTG CTGAGCCGCG AGGGCGAGAT TGCCATCGCC
AAGCGGATCG AAGCGGGCCG GAATACCATG ATCGCGGGGC TCTGCGAGAG CCCGCTGACC
TTTCAGGCGA TCACGATCTG GCGCGACGAA CTGCTGTCCG AGGACATCCT GTTGCGGGAC
GTCATTGACC TGGAGGCCAC CATGGGTGGG GCCATGGACG AGGACGAAGA AAGTTCCAGT
GTCGTGGAAA TGGCAGCCAA CAGCCCGGCC GCCCCGTCAG AGAAGTCCGA CGAGCCGGAA
CTGGACGCGG ACGGCAACCC GATTGCCAAG ACCGACGATG AAGACGACGA GGACGATCAG
GCCAACATGT CCCTCGCTGC CATGGAAGCG GCCCTCAAGC CCAAGGTGCT GGAGACGCTC
GACCTGATCG CGCGCGACTA TGCACAGTTG AGCGAGATGC AGGATCTGCG CATTTCGGCC
ACGCTGAACG AGGATGAGAG CTTCTCGGTC GAGGACGAGT CGAACTACCA GAAGCTGCGG
GCCGAGATCG TTCTCCTCGT CAACGAGTTG CACTTGCACA ACAACCGTAT CGAGGCGCTG
ATCGACCAGC TGTATGGGAT CAACCGTCGG ATCATGGCCA TCGACTCGAG CATGGTGAAG
CTTGCCGATC AGGCGCGGAT CAACCGCCGC GAGTTCGTCG AAGCCTATCG CGGCTACGAG
TTGGACCCGA CCTGGTTGGA GCGTATGGCC GAAAAGCCCG GGCGCGGATG GCAGGCTTTC
ATCGAACGCT CCACAACCAA GATCGAAGAG CTGCGCTCGG ACATGGCCCA GGTCGGCACC
TATGTCGGCG TGGACATCAC CGAGTTCCGT CGCATCGTGC AGCAGGTGCA GAAAGGCGAG
AAGGAGGCCC GGCAGGCGAA GAAGGAAATG GTCGAGGCGA ACCTGCGCCT CGTAATTTCC
ATTGCCAAGA AATACACCAA TCGCGGCCTG CAGTTCTTGG ACCTTATCCA GGAAGGCAAT
ATCGGCCTGA TGAAGGCCGT CGACAAGTTC GAGTATCGCC GCGGCTACAA GTTTTCCACC
TATGCGACCT GGTGGATCCG TCAGGCGATC ACCCGGTCCA TTGCGGACCA GGCGCGCACG
ATCCGGATCC CAGTGCATAT GATCGAGACG ATCAACAAGC TGGTGCGCAC CGGGCGCCAG
ATGCTGCATG AGATCGGCCG CGAGCCGACA CCGGAGGAAC TGGCCGAAAA GCTCCAAATG
CCGCTGGAAA AGGTGCGCAA GGTGATGAAG ATCGCCAAGG AGCCGATCAG CCTGGAGACG
CCCATCGGCG ACGAGGAAGA CAGCCAGCTT GGGGACTTCA TCGAGGACAA GAATGCGGTT
CTGCCGCTGG ACTCGGCCAT TCAGGAGAAC CTGAAAGAGA CCACGACCCG GGTGCTGGCT
TCGCTGACCC CGCGCGAAGA ACGCGTGTTG CGCATGCGGT TCGGAATCGG GATGAACACC
GACCATACGC TCGAAGAGGT TGGTCAGCAG TTCAGCGTGA CCCGCGAACG CATCCGGCAG
ATCGAGGCGA AAGCGCTGCG CAAGCTCAAG CATCCCAGCC GGAGCCGGAA GCTGCGCAGT
TTCCTGGACC AGTAA
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| Protein sequence | MAAKDTDDRK TDDQDAEAML DMSQAAVKKM IAEARTRGYI TYDQLNQVLP PDQVSSEQIE
DVMSMLSEMG INIIEEDEAE DGDAPANAST QVVESSSSRE VAVSTSSSET LDRTDDPVRM
YLREMGSVEL LSREGEIAIA KRIEAGRNTM IAGLCESPLT FQAITIWRDE LLSEDILLRD
VIDLEATMGG AMDEDEESSS VVEMAANSPA APSEKSDEPE LDADGNPIAK TDDEDDEDDQ
ANMSLAAMEA ALKPKVLETL DLIARDYAQL SEMQDLRISA TLNEDESFSV EDESNYQKLR
AEIVLLVNEL HLHNNRIEAL IDQLYGINRR IMAIDSSMVK LADQARINRR EFVEAYRGYE
LDPTWLERMA EKPGRGWQAF IERSTTKIEE LRSDMAQVGT YVGVDITEFR RIVQQVQKGE
KEARQAKKEM VEANLRLVIS IAKKYTNRGL QFLDLIQEGN IGLMKAVDKF EYRRGYKFST
YATWWIRQAI TRSIADQART IRIPVHMIET INKLVRTGRQ MLHEIGREPT PEELAEKLQM
PLEKVRKVMK IAKEPISLET PIGDEEDSQL GDFIEDKNAV LPLDSAIQEN LKETTTRVLA
SLTPREERVL RMRFGIGMNT DHTLEEVGQQ FSVTRERIRQ IEAKALRKLK HPSRSRKLRS
FLDQ
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