| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2257 |
|---|
| Symbol | nrdR |
|---|
| ID | 5713910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2379314 |
|---|
| End bp | 2379781 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641268179 |
|---|
| Product | transcriptional regulator NrdR |
|---|
| Protein accession | YP_001533594 |
|---|
| Protein GI | 159044800 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains |
|---|
| TIGRFAM ID | [TIGR00244] transcriptional regulator NrdR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.382244 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTGCC CATTTTGTGG AAACGTAGAC ACGCAGGTCA AGGACTCCCG CCCCGCCGAG
GACCATGTCG CGATCCGGCG GCGCCGGTTC TGCCCGGCCT GCGGGGGGCG GTTCACCACC
TATGAACGGG TGCAGTTGCG CGACCTTGTG GTTATCAAAT CTTCCGGCAA ACGCGAGGAT
TTCGACCGCG ATAAGCTGGA ACGCTCAATC CGCATCGCCA TGCAGAAACG GCCGGTGGAG
CCTGATCGTC TGGATCAGAT GATTTCCGGC ATCGTCCGGC GGTTGGAGAG CATGGGCGAG
ACCGATATTC CCTCGGCCAC CATCGGCGAG ATCGTGATGG AAGCACTCGC CCGGATCGAC
ACGGTGGGTT ACGTCCGGTT TGCCAGCGTT TACAAGAATT TCCAGGCGGC GGATGACTTT
GACAAGTTCG TGAGCGAGTT GCGGCCGCCG ACCGGCAAAG ACAGCTGA
|
|---|
| Protein sequence | MRCPFCGNVD TQVKDSRPAE DHVAIRRRRF CPACGGRFTT YERVQLRDLV VIKSSGKRED
FDRDKLERSI RIAMQKRPVE PDRLDQMISG IVRRLESMGE TDIPSATIGE IVMEALARID
TVGYVRFASV YKNFQAADDF DKFVSELRPP TGKDS
|
|---|
| |