| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2228 |
|---|
| Symbol | |
|---|
| ID | 5713881 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 2351401 |
|---|
| End bp | 2352594 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641268150 |
|---|
| Product | putative aminotransferase |
|---|
| Protein accession | YP_001533565 |
|---|
| Protein GI | 159044771 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.143236 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTTA TCGCCCCGAA CACCTATGAT GCCGAGCCGA TCCCTGCCGC GGCCCGTGCC
GAGATCGACG GGTTGCTGCA ATCGGGTGAT CTGTTCCGCT ATACCGCGCC GGAGAATGCG
CCTGTCTCCC TGCTGGAACA GGAATTCTCC GAGATGATGG GAAGCCGTTA TGCCGTGGCG
GTGGCATCCT GTTCGGCGGC GCTGTTCCTG TCTTTGAAGG CGCTGGACCT GCCGCGCGGG
GCCAAGGTGC TGATCCCGGC CTTCACCTTC GCGGCGGTGC CCTCGGCGGT GGTGCATGCG
GACTGCACAC CGGTGCTGGT CGAGGTGGGC GCCGATTACC GGATCGACCT GGAGGATTTC
GCGGCCAAGC TGACCGAAGA CATCGCTTGT ATCCTGATCA GTCACATGCG CGGGCACACA
TCGGACATGG ACGCGATCAT GGCGCTGGCC GATGCGCGCG GCATCCCCGT GATCGAGGAC
GCGGCCCATT CCCTGGGCAC GGTGTGGAAG GGGCGCAAGA TCGGAACGAT CGGGCGGATC
GGCTGTTTCT CGTTCCAGTC CTACAAGCTG GTGAATGCGG GCGAAGGGGG GATCCTGATC
ACCGACGATG CGGATCTGGC CGCGCGGGCG ATCATCATGT CCGGCGCCTA TGAGCATGCG
TGGAAGAAAC ACCCGGGCAT CGGCTCGGCC TGCGCGCGGT GGCAGAACCA GCTGCCGCTT
TACAACACGC GGCTGGGCAA CCTGTCGGCG TCGATCATCC GGTCGCAATT GGCGGAAATC
CCGCGCCGGG TGCGGGACGG GCGCGCCAAT CACGACTATG TCGCCGCCGC CCTGAACGCG
CTGCCCTGGA TGCAGGTGCC CAGCCCCCTG CCCGGAGAAG CCCGCGCGCC GGATTCGATC
CAGTTCAACC TTGTGGGTTT GAGCGACGCA GAGGTCCGGG CGTTCTGCGC GGCGACGCAG
ACCCATGGCC TGTCGGTGCA GGTGTTCGGG ATGAGCGCCG ACAATGCACG GGCCTATTGG
AACTGGCAAT TCCTGCGGGA TCAGCCGGAG TTGCCCAAGA CGCGCGAGAT GCTGATGCGG
GCCTGCGATC TGCGCCTGCC CGCACGGCTG ACCCCGGACG AGCTGAATAC GATCATTGCG
ATCCTGCGGG AGGGGATTTT CGCGGTGAAG GAGCCCCAGC GGCTGAGCGC CTAG
|
|---|
| Protein sequence | MTLIAPNTYD AEPIPAAARA EIDGLLQSGD LFRYTAPENA PVSLLEQEFS EMMGSRYAVA
VASCSAALFL SLKALDLPRG AKVLIPAFTF AAVPSAVVHA DCTPVLVEVG ADYRIDLEDF
AAKLTEDIAC ILISHMRGHT SDMDAIMALA DARGIPVIED AAHSLGTVWK GRKIGTIGRI
GCFSFQSYKL VNAGEGGILI TDDADLAARA IIMSGAYEHA WKKHPGIGSA CARWQNQLPL
YNTRLGNLSA SIIRSQLAEI PRRVRDGRAN HDYVAAALNA LPWMQVPSPL PGEARAPDSI
QFNLVGLSDA EVRAFCAATQ THGLSVQVFG MSADNARAYW NWQFLRDQPE LPKTREMLMR
ACDLRLPARL TPDELNTIIA ILREGIFAVK EPQRLSA
|
|---|
| |