| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2208 |
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| Symbol | |
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| ID | 5713861 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2333780 |
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| End bp | 2335267 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641268130 |
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| Product | putative D-alanyl-D-alanine carboxypeptidase/endopeptidase |
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| Protein accession | YP_001533545 |
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| Protein GI | 159044751 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00369508 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGGC GCGCCCTGCT GAGCGGGCTG GCCGCGCAGG CCGCCCTTCT GCCCGGCGCC
GCCCGCGCGC TCGGCAGCTC GCCGCACCCC GCGCCCCGAC CCGACGGGCT CTGGCGCCGC
GCCGTGCCCG AGCTCGGGGA GCTGCTGCGC GCCGCCGATC TCGGCGGACA GACCAGCCTT
GCGGTGATCG ACCTGCGCAG CGGGCTGGCG CTGGAATCCG TCGCCGGGGG CACCCCCCTG
CCACCGGCCA GCGTCGCCAA GGCCGCCACC GCGCTCTACG GGCTGCGCGT GCTGGGGCCG
GAACATCGCT ACACCACCCG CCTGCTGGCC ACGGGCCCGA TCCGCGCGGG CCGCCTCGAC
GGCGACCTGA TCCTCGCCGG CAGCGGCGAT CCCAGCCTCG ATACCGCCGC CCTGGCCGGG
CTTGCCGACC GGTTGCGCGC GGCCGGGGTC TCGGAGGTCG CGGGCGCGCT CCGGGTGCAG
GGCAGCGCGC TCCCCGAGAT CCGCTCCATC GACCCGGGCC AGCCCGACCA CCTCGGCTAC
AGCCCGGCCA TCGCGGGGCT CAACCTCAAC TTCAACCGGG TCTATTTCGA ATGGAAACGC
CAGGGCAGCG ACTATGCCAT CACCATGGAC GCCCGCACCG GCGCGTTGCG CCCGCAGGTG
CGCGTGTCGT CCATGTCGGT GCAGCCCCGG AACCTGCCGA TCTACACCTA CGAACAACGC
GGCGCAGCCG ACCACTGGAC CGTCGCCCGC GACGCCCTGG GTGCCGAGGG CGGCCGCTGG
CTCCCGGTGC GCAACCCGGC CGCCTATGCC GCGGACGTGT TCCGCACGCT CTGCGGCGCG
CAGGGCATCC GCGTGACCCT CGGCCCGCCC CTGGCGGTGC TGCCGGACAC CGCGACGCTC
ATCGCCAGCC ATGACAGCGA AACCCTCCCC GGCCTGCTGC GCGGGATGCT GAAATACTCC
ACCAACGTCA CCGCCGAATG CATCGGCCTG ACCGCTTCCA CCGCGCTCGG CGCCCGCCCC
GACAGCCTCC AAGCCTCCGG CGCGCAAATG GCCGCCTGGC ACAGCGCCCA ACTGATGGGC
GCAGGGCCGA TCCGCTTTGC CGACCATTCC GGCCTCGGCG ACCGCTCCCG CATCTCCAGC
CTCGACATGG CCCGCCTGCT GAGCACCCAT GGCACCCGAA CCGCGCTCAC GCCGCTGCTG
AAACCCTACC TGCCACGGGA TGCCAGCGGC GCGCGCATGG CCAGCGCCCC GGCGCAGGTG
GTGGCCAAGA CCGGCACGCT CAACTTCGTC TCCGGCCTCG CAGGCTACAT CACGCCACCC
TCGGGCCGCG CGCTGGCCTT CGCGATCTTC TCGGCCGACA TCGACCGCCG CGCGGCCCTC
AGCCGCGCCG AACGCGAACG CCCCGAGGGG GGCCGCGCCT GGGCCCGCCG CGCGCGCCGT
TTGCAAAATG ATCTCGTCCT GCGCTGGAGC CGCCTCTACG GCGCCTGA
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| Protein sequence | MNRRALLSGL AAQAALLPGA ARALGSSPHP APRPDGLWRR AVPELGELLR AADLGGQTSL
AVIDLRSGLA LESVAGGTPL PPASVAKAAT ALYGLRVLGP EHRYTTRLLA TGPIRAGRLD
GDLILAGSGD PSLDTAALAG LADRLRAAGV SEVAGALRVQ GSALPEIRSI DPGQPDHLGY
SPAIAGLNLN FNRVYFEWKR QGSDYAITMD ARTGALRPQV RVSSMSVQPR NLPIYTYEQR
GAADHWTVAR DALGAEGGRW LPVRNPAAYA ADVFRTLCGA QGIRVTLGPP LAVLPDTATL
IASHDSETLP GLLRGMLKYS TNVTAECIGL TASTALGARP DSLQASGAQM AAWHSAQLMG
AGPIRFADHS GLGDRSRISS LDMARLLSTH GTRTALTPLL KPYLPRDASG ARMASAPAQV
VAKTGTLNFV SGLAGYITPP SGRALAFAIF SADIDRRAAL SRAERERPEG GRAWARRARR
LQNDLVLRWS RLYGA
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