| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2189 |
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| Symbol | cpdB |
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| ID | 5713842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2314997 |
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| End bp | 2316958 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641268111 |
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| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
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| Protein accession | YP_001533526 |
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| Protein GI | 159044732 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
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| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGAACC CCATGACCCG CCGGGAGTTT CTCGGCACCG CCGCCGGAGC CAGCTTGATC
GCGCTACATC CCTATTCCGC CCGTGCCGCC GCCAACCAGG CACACCTGCG GATCATGGAA
ACGACCGATC TGCATGTGCA TGTCTTCCCC TATGATTACT ACGCCGACCG ACCCCGCGAC
ACCGTGGGCC TGGCCCGTAC CGCTGCCCTG ATCGACGACA TCCGCGCCGA GGCGACAAAT
GCGCTCCTGG TGGACAATGG CGACTTCCTC CAAGGCAACC CGATGGGCGA CTACATCGCC
TATGAGCGTG GCATGAAAGA GGGTGACACC CACCCGGTGA TCACCGCCAT GAACACCGTG
GGCTTCGACG CCTCGACCCT GGGCAACCAC GAGTTCAACT ACGGGCTCGA TTTCCTGATG
AAATCCCTGG CCGGGGCCGA GTTCCCCGTG ATCTCGGCCA ATGTGGTCAA GGACATGGGC
GCGGGCCCGC GCGGCGACAC CACGTTCATC GCGCCCTACG TGATCCTCGA CCGGATGCTG
ACCGACGGCG CGGGCGAGAC CCACCCGATC AAGATCGGGC TGATCGGCTT CGTGCCGCCC
CAGATCATGA ACTGGGACCG CAAGCATCTC GAAGGCAACG TGCAGGCCCG CGACATCCTC
GAGACCGCCC GCGCCTACAT CCCCCAGATG CGCGAGCAGG GCGCCGACAT CATTATCGCG
CTCAGCCATT CGGGCATCGG CTCGGCACAG GAAACCGACG GGATGGAGAA CGCTTCCGTC
CCGCTGGCCG GGCTCGATGG GATCGATGCC ATCGCCACCG GGCACAGCCA CCTGGTCTTC
CCCTCCGCCA CCTATGCGGA CTATGCCGCC GTCGATGCCG AGGCCGGCAC GATCCACGGC
AAGCCCGCGA CCATGGGCGG GTTCTGGGGC TCCCATATGG GCCTGATCGA CCTGATGCTC
GAACGCGAGG GCGGCGCCTG GCGCGTCGTC ACCGCCGAGA CCGAGGCGCG CCCGATCTCC
CAGCGCAACG AGGACCGCTC GATCACCGCC CTGGTCGAGA GCCAGGATTA CGTGCTGGCC
TCGGTGCAGG AAGACCACGA CGCCACCCTC GCCTATGTCC GCCGCGCCGT GGGCAAGACC
GACGCGCCGC TGCACTCCTA TTTCGCGCTG GTGGCCGATG ACCCCTCGGT CCAGATCGTC
TCCATCGCGC AAAGCTGGTA CATCGCCGAC ATGCTGAAAG GCACCGAGTA CGAAGGCCTC
CCGATCCTGT CGGCGGCCGC CCCGTTCAAG GCCGGGGGCC GCGGCGGGCC GGAGTATTAC
ACCGACGTGC CCGCGGGCGA CGTGGCGATC AAGAACGTCG CGGATCTCTA TCTCTACCCC
AACACCGCCC GGGCCGTGCT GGTCACCGGG GCGCAGGTCA AGGACTGGCT CGAACGCTCC
GCGGGCATGT TCAACCAGGT CACTCCGGGC GCACAGGACG CCGCCCTCCT GAACCCGGAC
TTCCCGAGCT ACAATTTCGA CGTGATCGAC GGGGTCACCT ACCAGATCGA CCTCAGCCAG
CCCTCGAAAT TCGACGCCAA GGGCGAGTTG CTGAACCCGG ACGCCAACCG GATCGTGGAC
CTGCGCCACG ACGGCGCGCC GATCGACCCC GACGCCCGCT TCATCATCGC CACCAACAAC
TACCGCGCCT CGGGCGGCGG CAGCTTCCCC GGCACCGGTG ACACGGTAAT CTTCGAAGGG
CCCGACACCA ACCGCGACGT GATCGTCCGC TACATCGTCG AACAGGGCAC GATCAGCCCG
CGCGCCGATG GCAACTGGCG CTTCGCCCCC CTGCCCGGCA CCACCGTGTT GTTCGAAACC
GGGCCGAAGG CCATCGACTA CCTGGGCGAG GTCACCAGCC TGACCATCGC ACCGGCGGGC
GCGGCCCCCG ACGGGTTCAT GCAGTTCCGC ATCACCCTCT GA
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| Protein sequence | MLNPMTRREF LGTAAGASLI ALHPYSARAA ANQAHLRIME TTDLHVHVFP YDYYADRPRD
TVGLARTAAL IDDIRAEATN ALLVDNGDFL QGNPMGDYIA YERGMKEGDT HPVITAMNTV
GFDASTLGNH EFNYGLDFLM KSLAGAEFPV ISANVVKDMG AGPRGDTTFI APYVILDRML
TDGAGETHPI KIGLIGFVPP QIMNWDRKHL EGNVQARDIL ETARAYIPQM REQGADIIIA
LSHSGIGSAQ ETDGMENASV PLAGLDGIDA IATGHSHLVF PSATYADYAA VDAEAGTIHG
KPATMGGFWG SHMGLIDLML EREGGAWRVV TAETEARPIS QRNEDRSITA LVESQDYVLA
SVQEDHDATL AYVRRAVGKT DAPLHSYFAL VADDPSVQIV SIAQSWYIAD MLKGTEYEGL
PILSAAAPFK AGGRGGPEYY TDVPAGDVAI KNVADLYLYP NTARAVLVTG AQVKDWLERS
AGMFNQVTPG AQDAALLNPD FPSYNFDVID GVTYQIDLSQ PSKFDAKGEL LNPDANRIVD
LRHDGAPIDP DARFIIATNN YRASGGGSFP GTGDTVIFEG PDTNRDVIVR YIVEQGTISP
RADGNWRFAP LPGTTVLFET GPKAIDYLGE VTSLTIAPAG AAPDGFMQFR ITL
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