| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2183 |
|---|
| Symbol | fabD |
|---|
| ID | 5713836 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2310332 |
|---|
| End bp | 2311279 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641268105 |
|---|
| Product | malonyl CoA-acyl carrier protein transacylase |
|---|
| Protein accession | YP_001533520 |
|---|
| Protein GI | 159044726 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0331] (acyl-carrier-protein) S-malonyltransferase |
|---|
| TIGRFAM ID | [TIGR00128] malonyl CoA-acyl carrier protein transacylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.944962 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGAG CCTTCGTTTT CCCCGGGCAG GGGGCACAGA CTATCGGTAT GGGGCGCGAT
CTCGCCGAGG CCTACCCGGC GGCGCGGGCC GTTTTCGAGG AGGTCGACGA TGCCCTGGGC
GAGGCGCTGA GCGCGCTGAT CTGGGAGGGC GAGGCGGACC GGCTGACGCT GACCGAGAAT
GCGCAGCCCG CGCTGATGGC GACGTCCCTG GCCGCGCTGC GGGCGCTGGA GGCCGAGGGG
CTGGACTGGG CGGAGGTGTC TTGCGCGGCG GGGCATTCGC TGGGCGAGTA TTCGGCGCTG
GCGGCGGCGG GCGCGCTCAG CGTGGGCGAT ACAGCGCGGC TGTTGCGGGC GCGGGGGCGG
GCCATGCAGG AGGCGGTGCC CGTGGGCGTG GGCGCCATGG CGGCCCTTCT GGGGCTGAAT
TTCGAGACCG TTTGCGCGGT GGCCGAGGAA GCCGCCCAAG GCGAGGTCTG CGAGGCGGCC
AATGACAACG ACCCGGGGCA GGTCGTGGTG TCGGGCCACA AGGCGGCGGT GGAGCGTGCG
GTCGATCTGG CCAAGGCGCG CGGCGCGAAA CGCGCGGTGT TGCTGCCGGT GAGCGCGCCG
TTCCATTGCG CGTTGATGGC GCCCGCGGCG GAGACGATGA AAGATGCGCT CGCCGCGGTG
GAGATCGCCA CGCCGCGCGT GCCGGTGATC GCCAATGTGC TGGCCGCCCC GGTCACCGCG
CCCGAGCAGA TCCGCGACCT GCTGATCCGG CAGATCACCG GGTCGGTGCG TTGGCGCGAA
AGCGTGGGCT GGATGGCGCA GAACGGCGTG ACGGAAATCT GGGAGATCGG CGCGGGCAAG
GCCTTGATCG GCATGGTGCG GCGCATCGAT CGCAGCATCG CGACCCAGGC GATCGGCACC
TCTGAGGATG TCCGCAAGGT CTGCACCACA CGCGAGGAGA CGGCATGA
|
|---|
| Protein sequence | MSRAFVFPGQ GAQTIGMGRD LAEAYPAARA VFEEVDDALG EALSALIWEG EADRLTLTEN
AQPALMATSL AALRALEAEG LDWAEVSCAA GHSLGEYSAL AAAGALSVGD TARLLRARGR
AMQEAVPVGV GAMAALLGLN FETVCAVAEE AAQGEVCEAA NDNDPGQVVV SGHKAAVERA
VDLAKARGAK RAVLLPVSAP FHCALMAPAA ETMKDALAAV EIATPRVPVI ANVLAAPVTA
PEQIRDLLIR QITGSVRWRE SVGWMAQNGV TEIWEIGAGK ALIGMVRRID RSIATQAIGT
SEDVRKVCTT REETA
|
|---|
| |