| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2174 |
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| Symbol | |
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| ID | 5713827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2301398 |
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| End bp | 2302615 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641268096 |
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| Product | putative phage major capsid protein |
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| Protein accession | YP_001533511 |
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| Protein GI | 159044717 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4653] Predicted phage phi-C31 gp36 major capsid-like protein |
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| TIGRFAM ID | [TIGR01554] phage major capsid protein, HK97 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAACA GCGATCCCTC TGCCTTGCTC GCAGCAAAGA CGGCCCCTGA CGCCGTGGCG
GACGGGGTGT CTCCGCTCGC CGAAGTCACC GCAGAACTGA GTGCCTTCGT GCGCGAAGTC
ACGGCCCAGA AGGCCGAAAT GAAATCCCGA TTGAAACAAC AAGAAGAGCG TCTCCTCATG
CTTGACCGCA AATCTACTTC GTACGCGCGC CCCGCGCTGT CTGGTGCTGT TGCCGAAGCA
GCGCCCCATC AGAAGGCGTT CGACGCCTAT CTGCGTTCCG GCGATGACGA CGCGCTGCGT
GGTCTGGAAC TGGACGGCAA GGCCATGTCC ACGGCGGTGT CCGGCGAGGG CGGCTATCTC
GTCGATCCGC AGACCTCCGA GACCGTGAAG AACGTCCTGA AGTCCCAGGC CTCCCTGCGG
GCGGTCGCAC AGGTCGTGAC GGTGGAAGCC ACCAGCTATG ATGTGCTGGT CGATCACACC
GAGGTCGGCA CCGGCTGGGC GAGCGAGACC GGCAACCTGA CCGAGACCGA CACCCCGCAG
ATCGACCGGA TCTCGATCCC GCTGCACGAG CTTGCTGCCC TGCCGAAGGT CAGCCAGCGA
CTGCTGGATG ATGCGGCGTT CGACATCGAG GCATGGCTGG CTGAGCGCAT CGCCGACAAG
TTCGCCCGCT CGGAAGCGGC GGCCTTCGTC AACGGAGACG GCGCCGACAA GCCCAAGGGG
TTCCTTACCC ATGACAGCGT CGACAACGAT GTGTGGACCT GGGGCAATCT CGGCTACGTG
GTCACCGGCT CGGATGGTGA TTTCAACAGC GTGAGCCCCG CAGATGCGAT CGTGGACCTG
GTTTACGCGC TGGGCGCGCG CTACCGCGCC AATGCCAGCT TCATCATGAA CTCCAAGACC
GCTGGTGTCG TGCGCAAGAT CAAGGATGCC GATGGCCGGT TCCTGTGGTC GGACGGCCTT
GCCGCGGGGG AGCCGGCGCG TCTGCTGGGC TACCCGGTGC TGATCTCCGA GGACATGCCG
GATATCGGCA GCGATGCCAC GGCCATCGCC TTTGGCGATT TCGGCGCCGG CTACACCATC
GCGGAGCGTC CGGACCTGCG CATCCTGCGC GATCCGTTCT CGGCCAAGCC TCACGTTCTG
TTCTACGCCA CCAAGCGCGT GGGCGGGGAT GTGAGCGATT TCGCGGCGAT CAAACTGCTG
AAATTCGCGG TGAGCTAA
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| Protein sequence | MSNSDPSALL AAKTAPDAVA DGVSPLAEVT AELSAFVREV TAQKAEMKSR LKQQEERLLM
LDRKSTSYAR PALSGAVAEA APHQKAFDAY LRSGDDDALR GLELDGKAMS TAVSGEGGYL
VDPQTSETVK NVLKSQASLR AVAQVVTVEA TSYDVLVDHT EVGTGWASET GNLTETDTPQ
IDRISIPLHE LAALPKVSQR LLDDAAFDIE AWLAERIADK FARSEAAAFV NGDGADKPKG
FLTHDSVDND VWTWGNLGYV VTGSDGDFNS VSPADAIVDL VYALGARYRA NASFIMNSKT
AGVVRKIKDA DGRFLWSDGL AAGEPARLLG YPVLISEDMP DIGSDATAIA FGDFGAGYTI
AERPDLRILR DPFSAKPHVL FYATKRVGGD VSDFAAIKLL KFAVS
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