Gene Dshi_2163 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_2163 
Symbol 
ID5713159 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp2292386 
End bp2296303 
Gene Length3918 bp 
Protein Length1305 aa 
Translation table11 
GC content63% 
IMG OID641268085 
Producthypothetical protein 
Protein accessionYP_001533500 
Protein GI159044706 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGACCA TCGTTTTATC CGCAGCCGGA GCGGCCATTG GCACATCGCT CGGCGGGGCG 
GCTTTCGGGC TGTCCGCGAC GGTTATCGGA CGGGCCATCG GGGCCACGAT TGGCCGTGCC
GTCGATCAGC GCCTGATGGG AGCCGGCTCG GCCGCGGTGG AAACGGGGCG GATCGACCGG
TTCCGGATCT CGAATGCGAG CGAAGGCGAT GTGATCCCGA TGGTGTTCGG GAAGATGCGC
GTTGCCGGAC AGGTCATCTG GGCCTCCCGG TTCAAGGAGA CCAGTTCCTC GTCCGGGGGC
GGCAAGGGCG CACCGGCGCG GCCGAAGGTG ACCAGTTTCA CCTATACCGT GAGCCTAGCA
ATCGCGCTCT GTGAAGGCGA GATCCAGAGT GTGGGCCGGG TGTGGGCCGA TGGCGTTGAA
ATCTCGCAAA GTGATCTGAA CCTGCGGGTG TACTATGGCG CGCATGATCA GACGCCGGAC
CCCAAGATCG AGGCAGTCGA AGGTGCAGGC AGCGTGCCGG CATTTCGCGG CACCGCCTAT
GTCGTGATCG AGGATCTGGA CCTGGGGCAG TATGGCAACC GGGTGCCGCA GTTCAGCTTC
GAGGTCTTCC GTCCTGCCCA GCCGGAGGGC GGCGCGCCGC CGCTTGCAAG CCGGATACCG
GGTGTGGCGA TGATCCCGGG GACGGGGGAA TACGCGCTGG CGACGACGCC TGTGCACTGG
ACCTCGGGGC CGGGTGCCAA CACCTCGATC AATATCAACA CGCCCGGGGC CGAGACCGAT
TTCGATGTCT CGTTGCAGAG CCTTCAGCGG GATTTGCCGA ACTGCAATTC GGCCTTGCTG
GTGGTGAGTT GGTTCGGGAA CGATCTGCGC TGCGGAGAGT GCGAGCTACG CCCGAAGGTA
GATCAGAAGC GATACGAAGG GGTCCAGATG CCCTATCGCG TGGGCAGCTT TGCGCGGGAC
GATCTGATGG AAGTACCGCG CGTGGATGGC GCGCAGATCT ATGGCGGTAC GCCCTGCGAT
CGGTCGGTCA TCGAAGCGAT TTTGGCATTG AAAGACGCGG GCAAGAGCGT TGTTTTCTAT
CCCTTTATCC TGATGGAGCA GCTTGCGGGC AATGATTTGC CGAACCCCTA TTCCGGGCAG
CCGGGCCAGC CGGTCTTGCC TTGGCGCGGG CGTATCACAA GCTCGCTCGC CCCGGGCCAG
GACGGCTCGC CCGACGGTAC CGCGGATGCA GAGACCGAAG TGGCGCGGTT TTTCGGGAAT
GCGTCGGCGT CCGATATCGC GATCTCGGGC AATTCGGTAT CGTGGAATTC GGGCGTGGAT
TGGAAGTACC GGCACTTCAT TCTCCACTAT GCGCGGCTGT GCGCGGCGGC GGGTGGTGTC
GATGCATTCT GCATCGGGTC GGAGATGCGG GCCCTGACGC AAATTCGTGG AGCCGACAAC
AGCTTCCCGG CGGTGGAAGC CTTGCGCGAT CTGGCGCGGG ACGTCCGTGC GATCCTGGGG
AACGAGACCA AGATCGGGTA TGCCGCCGAT TGGTCGGAGT ATTTCGGGTA CCATCCTCAG
GATGGCTCGG GCGATGTGTT CTTCCACCTT GACCCGCTTT GGGCGGACGA GGCGATCGAC
TTCATCGGGA TCGACAACTA CATGCCCCTA TCCGATTGGC GTGACGGGCT GGATCATGCG
GACGGGGATG CCGGGTCGAT CTACAACGCG GCATACCTTC GGGACGGGGT TGCCGGAGGG
GAAGGGTACG ACTGGTTCTA TGCCTCCGAG TCCGACCGCC GCGCACAGAT ACGCACACCC
ATCGAAGACG GTCTGGCCGG GGAGCCTTGG GTGTTCCGCT ACAAGGATCT GGTTGGGTGG
TGGTCGAACC ATCACCATGA CCGGATCAAT GGCGAACGCC AAGCGCAGCA TAGCCCTTGG
GTGCCGGGCA GCAAGCCGAT CTGGTTCACG GAAGTTGGCT GTGCGGCGGT CGACAAGGCT
ACGAACCAGC CCAACAAGTT CGTGGACATT CGTTCGTCGG AGTCCGCGTT GCCATGGTTC
TCGGATGGTC GACGCGATGA TCTGATCCAA CAGGCCTACT ACGACGCCAC GCTGGGCTAC
TGGACGGACC CTGACAACAA CCCGAGTTCC GATCTGTATG AGGGGCGGAT GCTGGATACG
GAGCGTATCC ACGCCTGGGC CTGGGACGCT CGGCCCTGGC CGTATTTCCC GAATAACGGC
GTCCTTTGGG CGGATTCGCC GAACTATGCC CGTGGCCACT GGATCGGCGG TCGGATCACG
GCGCAGTCGC TGGCGGAAGT CGTCAGGGAA ATCTGCCTGC GGGCTGGAGT AACCGAGGTC
GATGTGAGCG AATTGGCGGG TCTGGTCCGT GGCTACGTCG TGGACAACAT CTCGTCAGCC
CGTGCATCCC TGCAACCCCT GATGCTGGCG CATGGCTTCG AAGCGGTGGA GCGAAACGGG
ACCCTCGTGT TCCGAAGCCG CAGGCAGGAA AGAGCGACCG AGGTGGACCC TGACCTCTTC
GCGGTGGACA GTGACCTCGA AGGGGTATTG CAACTGACGC GCGCGCCCAA TGCGGAATTG
TCCGGGCGTG TTCAGCTGCG GTACATCGAA GAGGGCGGGG ACTATGCCAC CCGGTCTGCG
GAGGCGCTCT TCCCGGATGA GACATCCAAC ATCGTGTCGC AGTCCAGCTT TCCGATCAGC
CTGACCTACT CGGAGGGTAA GGCCATCGTC GAACGGTGGT TGGCGGAATC GCGTGTTGCA
AGAGAGACCG CGCGGTTTGC CTTGCCGCCG TCGCGGTCGG ATATCAAAGC CGGAGAAACC
CTCCAGCTTC CCCATGGATC GGGGGGTTCG GCTCTGTTTC GGGTGGATCG GATCGAAGAA
GGCCTGCAGC GTAGCATAGA TGCGGTTCGG GTTTCGGACA CGGTCTACAC GGCGAGCGAC
GCGGTGGAGG AGCTTCCTCC GGTCAAGCCC TTCTCGCCGC CCGTTCCGGT TTTCCCGGTC
TTTCTGGATC TGCCCCTCAT CACGGGGGAC GAGGTGCCCC ATGCGCCTCA TCTCGCCGTG
ACGGCGCGGC CCTGGCCAGG CAGTGTTGCG GTGTACAGTT CAGCGGAGGA CGCAGGGTAC
GAACTCGAGA AGTTCGTTGG ATCACCCGCG ACCCTCGGGG TCACGGAGAC GGATCTTCCG
CGGGCGCGGC CGGGGATATG GGACCTTGGG GCGCCGCTTC GGGTCAGGCT CACCTCCGGT
CAGTTCAACT CGGTTGACAC AGAAGCGGTT CTGCGCGGCG CAAATCTGGT GGCCATCGGG
TCGGGCTCTG CCTCAGGTTG GGAGTTGTTC CAGTTCCAGA CCGCCGAGCT TGTCGCAGCT
GACACTTTCG AGTTGTCGAA CCGCTTGCGC GGGCAACTGG GGACCGAGAC GGACATGGCC
GATATCTGGC CGACCGGCAG CTACGTTGTC TTGATCAATG GCGCGGTGGA GCAGGTGAAC
TTGGCATCCC AGGCCGTCGG TTTGCCGAGG CACTACCGGA TCGGGCCGGC GCAACGCCCC
ATAGATGACC CGACCTTCAT CCACGTGTCC GAAGCGTTTT CGGGCATTGG TCTTCGACCT
TATGCGCCGG TGCATGTTAC GGCTCGGTAT TCGGCGGATG GCGTCCGGGT GAGTTTTGTC
AGGCGCGCAC GGATTGATGG GGACCGCTGG GACCTGGAAG AGATACCCCT CGGCGAGTCG
ACGGAACGTT ACTTGGTGCG TGTGCGTGCC CTCGATGAGA CGCTTTTGCG TGAGGTCACG
GTAACTCAGA CAGTTTGGGA CTACACCGCG GAGATGTATG CGGAGGATGG CGCGCCAGCC
GGGGCCATTC TCGAAGTTGC ACAGATTTCC GACCGGTTTG GTCCAGGCTC TTTCGGAAGG
ACTATCTTCT ATGGCTAA
 
Protein sequence
MATIVLSAAG AAIGTSLGGA AFGLSATVIG RAIGATIGRA VDQRLMGAGS AAVETGRIDR 
FRISNASEGD VIPMVFGKMR VAGQVIWASR FKETSSSSGG GKGAPARPKV TSFTYTVSLA
IALCEGEIQS VGRVWADGVE ISQSDLNLRV YYGAHDQTPD PKIEAVEGAG SVPAFRGTAY
VVIEDLDLGQ YGNRVPQFSF EVFRPAQPEG GAPPLASRIP GVAMIPGTGE YALATTPVHW
TSGPGANTSI NINTPGAETD FDVSLQSLQR DLPNCNSALL VVSWFGNDLR CGECELRPKV
DQKRYEGVQM PYRVGSFARD DLMEVPRVDG AQIYGGTPCD RSVIEAILAL KDAGKSVVFY
PFILMEQLAG NDLPNPYSGQ PGQPVLPWRG RITSSLAPGQ DGSPDGTADA ETEVARFFGN
ASASDIAISG NSVSWNSGVD WKYRHFILHY ARLCAAAGGV DAFCIGSEMR ALTQIRGADN
SFPAVEALRD LARDVRAILG NETKIGYAAD WSEYFGYHPQ DGSGDVFFHL DPLWADEAID
FIGIDNYMPL SDWRDGLDHA DGDAGSIYNA AYLRDGVAGG EGYDWFYASE SDRRAQIRTP
IEDGLAGEPW VFRYKDLVGW WSNHHHDRIN GERQAQHSPW VPGSKPIWFT EVGCAAVDKA
TNQPNKFVDI RSSESALPWF SDGRRDDLIQ QAYYDATLGY WTDPDNNPSS DLYEGRMLDT
ERIHAWAWDA RPWPYFPNNG VLWADSPNYA RGHWIGGRIT AQSLAEVVRE ICLRAGVTEV
DVSELAGLVR GYVVDNISSA RASLQPLMLA HGFEAVERNG TLVFRSRRQE RATEVDPDLF
AVDSDLEGVL QLTRAPNAEL SGRVQLRYIE EGGDYATRSA EALFPDETSN IVSQSSFPIS
LTYSEGKAIV ERWLAESRVA RETARFALPP SRSDIKAGET LQLPHGSGGS ALFRVDRIEE
GLQRSIDAVR VSDTVYTASD AVEELPPVKP FSPPVPVFPV FLDLPLITGD EVPHAPHLAV
TARPWPGSVA VYSSAEDAGY ELEKFVGSPA TLGVTETDLP RARPGIWDLG APLRVRLTSG
QFNSVDTEAV LRGANLVAIG SGSASGWELF QFQTAELVAA DTFELSNRLR GQLGTETDMA
DIWPTGSYVV LINGAVEQVN LASQAVGLPR HYRIGPAQRP IDDPTFIHVS EAFSGIGLRP
YAPVHVTARY SADGVRVSFV RRARIDGDRW DLEEIPLGES TERYLVRVRA LDETLLREVT
VTQTVWDYTA EMYAEDGAPA GAILEVAQIS DRFGPGSFGR TIFYG