| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2160 |
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| Symbol | pdhC1 |
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| ID | 5713156 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2289232 |
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| End bp | 2290494 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641268082 |
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| Product | branched-chain alpha-keto acid dehydrogenase subunit E2 |
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| Protein accession | YP_001533497 |
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| Protein GI | 159044703 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
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| TIGRFAM ID | [TIGR01349] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.643956 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.360442 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTACCG AGATTCTGAT GCCTGCGCTG TCTCCGACCA TGGAGGAAGG CACGCTCGCG
AAATGGATGG TCAAGGAAGG CGACAGCGTC TCGTCCGGAG ACCTGCTCGC CGAAATCGAG
ACCGACAAGG CCACGATGGA GTTCGAGGCT GTTGATGATG GCATCATCGG CAAGATCCTC
GTTGCTGCGG GCACGGACGA TGTGAAGGTC AACACGCTCA TCGCGATCCT GCTCGAAGAG
GGCGAGGAGC TCGGCGCGGA GAAGCCTGCG GAGCAACCGC CGGAGCCCGC CTCCGTCCAA
CAAGAGGCCG CCCCGCAAGA GACTGCCAAA GCACCGCCGC CAAAAACCGG AGATCGTGTG
TTCGCCAGCC CCCTCGCCCG GCGCCTGGCA AAACAGAAAG GTCTGGACCT TTCCGAGATC
CGGGGCTCAG GTCCGCATGG CCGCATCGTG AAGGCAGATG TAGATGCCGC AGAACAGCCG
GCTGCCGTTC CGGAACAGGC TGCCGCACCC CAAACCCGCC AGCCAGAGGG TCCGAAATCG
GCTTCGTCCG TAGCATCGAT CTTCGCGGAT CGTCCCTTCA CCGAAGTTTC GCTCGATGGC
ATGCGAAAGA CCATCGCCGC GCGCCTGACG GAGGCCAAAC AGACGATCCC GCATTTCTAC
CTGCGCAGAG CGGCCAATCT TGATGCCCTG CTGACTTTCC GAACCGAGTT GAATGCGCAA
CTCGCGCCCA GCGGCAAGAA ACTGAGCGTC AATGATTTCG TGATAAAGGC CTGTGCCCGA
GCACTGCAGA GCGTGCCCCA CGCCAATGCT GTCTGGGCAG AGGACCGCAT CCTGCAGATG
CAGAGGTCCG ATGTCGCGGT TGCAGTGGCG ATCGAGGGCG GCCTGTTCAC GCCCGTGATC
AAGGATGCGG ATCAAAAGTC GATTTCCGCC CTTTCAGAGG AAATGAAAGA CCTCGCAGCC
CGCGCGCGCG AGCGCAAACT TGCGCCGAGT GAATATGTCG GCGGTACCTT CGCCATTTCC
AATCTCGGCA TGTTCGGAAT CGAGAATTTC GACGCGGTGA TCAACCCACC CCACGGGGCC
ATTCTCGCCG TGGGGGCAGG TGTCAAAAAG CCGACCGTCG ACGCGGATGG GGCTGTAACA
GTTGCGACGC AGATGTCCAT GACGCTGTCG GTGGACCACC GCGTCATCGA CGGCTCGGTT
GGCGCCGCAC TTCTGGCAGA GATCGTATCA GGCCTCGAAA ACCCGCTTCT TCTTCTGGCA
TAG
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| Protein sequence | MATEILMPAL SPTMEEGTLA KWMVKEGDSV SSGDLLAEIE TDKATMEFEA VDDGIIGKIL
VAAGTDDVKV NTLIAILLEE GEELGAEKPA EQPPEPASVQ QEAAPQETAK APPPKTGDRV
FASPLARRLA KQKGLDLSEI RGSGPHGRIV KADVDAAEQP AAVPEQAAAP QTRQPEGPKS
ASSVASIFAD RPFTEVSLDG MRKTIAARLT EAKQTIPHFY LRRAANLDAL LTFRTELNAQ
LAPSGKKLSV NDFVIKACAR ALQSVPHANA VWAEDRILQM QRSDVAVAVA IEGGLFTPVI
KDADQKSISA LSEEMKDLAA RARERKLAPS EYVGGTFAIS NLGMFGIENF DAVINPPHGA
ILAVGAGVKK PTVDADGAVT VATQMSMTLS VDHRVIDGSV GAALLAEIVS GLENPLLLLA
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