| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2159 |
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| Symbol | pdhB2 |
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| ID | 5713155 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2287863 |
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| End bp | 2289218 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641268081 |
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| Product | pyruvate dehydrogenase subunit beta |
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| Protein accession | YP_001533496 |
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| Protein GI | 159044702 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit
[COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.881738 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.475194 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCACAG AAATTCTCAT GCCCGCCTTG TCTCCGACCA TGGAGGAAGG CACGCTGGCG
AAATGGTTCG TGAAGGAAGG CGACAGCGTT TCCTCAGGGG ACATCCTCGC CGAGATTGAA
ACCGACAAGG CGACCATGGA GTTCGAAGCG GTCGATGAAG GGATCATCGG CAAGATCCTG
GTCGAAAGCG GCACGGATGG TGTCGCCGTG AACACCGCGA TTGCCGTGCT GATCCAGGAT
GGCGAAACCC TCAGCGACAC GGTCGCCGCA GCGCCTTCGG ATGAGGCGAC CGATCAACAG
CCCGCGCCTG CCGCGCCGGT GACCCCGGCA AGAATCGTCA TCCCGGACGA GCCGGATTTG
CCCCCGGGCA CGCAGATGAA ATCCATGACC GTGCGCGAAG CTCTGCGCGA CGCCATGGCC
GAGGAAATGC GCCGGAACGA GAACGTATTC CTGATGGGCG AAGAGGTGGC CGAATATCAG
GGCGCCTACA AAATCAGCCA AGGTTTGCTG GACGAATTCG GCTCCAAGCG GGTGATCGAC
ACGCCGATTA CCGAACACGG CTTCGCGGGA CTTGCGGTGG GAGCTGCATT TGGAGGGCTC
AACCCGATCG TGGAGTTCAT GACCTTCAAC TTCGCGATGC AGGCGATCGA CCAGATCATA
AACTCCGCGG CCAAGACCCT TTACATGTCC GGCGGCCAGA TGGGCTGCCC CATCGTGTTC
CGCGGCCCCA ATGGCGCGGC CGCGCGCGTC GCCGCACAAC ACAGCCAGGA CTCCGCCGCA
TGGTATGCGC ATATTCCGGG GCTGAAGGTG GCGATGCCCT ACTCCGCCTC CGACGCGAAA
GGCCTGCTGA AATCCGCCAT ACGCGATCCG AACCCGGTGA TCTTCCTGGA GAACGAAATC
CTCTACGGCC GCAGTTTCGA AGTGCCCATG ATCGACGACT ACACAGTGCC CTTTGGCAAG
GCGCGGATCT GGCGCGAAGG GCGCGATGTC ACCATCGTCA GCTTCGGGAT CGGCATGACC
TACGCGCTCG AAGCCGCGGA TCGGTTGGCC AAGGATGGCA TCAGCGCGGA AGTGGTCGAT
CTGCGGACCC TCCGGCCGCT CGATACCGAA ACCGTGATCG CATCGGTGCA GAAAACCAAC
CGTTGCGTGA CTGTCGAGGA AGGCTTCCCG GTGGCCTCCA TCGGAAACCA CATCTCGGCC
GTTTTGATGC AGGAAGCGTT CGACTATCTC GATGCGCCCG TGATCAACCT GACCGGCAAG
GATGTCCCGA TGCCCTATGC CGCAAACCTC GAAAAACTGG CCCTTGTGAC GACCGATGAA
GTGATTGAGG CCGTTCACAA GGTTACGTAC CGCTGA
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| Protein sequence | MATEILMPAL SPTMEEGTLA KWFVKEGDSV SSGDILAEIE TDKATMEFEA VDEGIIGKIL
VESGTDGVAV NTAIAVLIQD GETLSDTVAA APSDEATDQQ PAPAAPVTPA RIVIPDEPDL
PPGTQMKSMT VREALRDAMA EEMRRNENVF LMGEEVAEYQ GAYKISQGLL DEFGSKRVID
TPITEHGFAG LAVGAAFGGL NPIVEFMTFN FAMQAIDQII NSAAKTLYMS GGQMGCPIVF
RGPNGAAARV AAQHSQDSAA WYAHIPGLKV AMPYSASDAK GLLKSAIRDP NPVIFLENEI
LYGRSFEVPM IDDYTVPFGK ARIWREGRDV TIVSFGIGMT YALEAADRLA KDGISAEVVD
LRTLRPLDTE TVIASVQKTN RCVTVEEGFP VASIGNHISA VLMQEAFDYL DAPVINLTGK
DVPMPYAANL EKLALVTTDE VIEAVHKVTY R
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