| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2158 |
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| Symbol | pdhA1 |
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| ID | 5713154 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2286855 |
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| End bp | 2287850 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641268080 |
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| Product | pyruvate dehydrogenase E1 component subunit alpha |
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| Protein accession | YP_001533495 |
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| Protein GI | 159044701 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1071] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit |
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| TIGRFAM ID | [TIGR03182] pyruvate dehydrogenase E1 component, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.324066 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAGCAC GCCGCTCCAC GAAGAAACCC AACGTCTCGA AAGAGGACCT GATGTCCTAC
TATCGGGAGA TGCTGCTGAT CCGCAGGTTC GAGGAAAAGG CAGGCCAGCT CTACGGGATG
GGTCTGATCG GAGGCTTCTG TCACCTTTAC ATCGGCCAGG AAGCGGTGGT CGTCGGCCTC
GAAGCCGCCG CCGAAGACGG CGACAAGCGC GTCACGAGCT ACCGGGACCA CGGCCACATG
CTGGCCTGCG GGATGGACCC CAAGGGTGTG ATGGCCGAAC TGACCGGACG CGAGGGGGGC
TACTCCAAGG GCAAGGGCGG CTCGATGCAC ATGTTCTCGA AGGAGAAGCA CTTCTATGGC
GGGCACGGTA TCGTCGGTGC GCAGGTGCCA ATCGGCGCTG GGCTAGCGTT TTCGGACAAG
TACAGGGGCA ATGATCGTGT GACCTTCGCC TATTTCGGCG ACGGTGCCGC GAACCAGGGG
CAGGTCTACG AAACCTACAA CATGGCAGAG TTGTGGATGC TGCCGGTGGT CTTCGTGATC
GAGAACAACC AGTACGCGAT GGGAACCTCC GTGGCGCGCT CAACCAAGTC ACCATCTCTT
TGGGAACGGG GCGCGGCCTA TGGTATCCCC GGGGAAGAGG TCGACGGCAT GGACGTTCTG
GCGGTGAAGG CTGCCGGCGA GAAGGCGGTT GCCCACTGTC GCGCAGGCAA GGGCCCCTAC
ATCCTCGAGG TCAAGACATA TCGCTACCGA GGGCATTCCA TGTCTGATCC CGCGAAGTAC
CGCACCCGTG AAGAAGTCCA GAAAGTGCGC GAGCAACGCG ATGCCATCGA GCATGTGCGC
GAGATGCTCC TGAGCGGCAA TCATGCGAGT GAAGATGAGT TGAAGGCAAT AGACAAGGAG
ATCAAGGCCG TGGTCAACGA GGCGGCGGAA TTCTCCCGCG AGAGCCCTGA GCCGGCCCTG
TCCGAGCTCT GGACCGACAT TTACGCCGAA GCTTGA
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| Protein sequence | MAARRSTKKP NVSKEDLMSY YREMLLIRRF EEKAGQLYGM GLIGGFCHLY IGQEAVVVGL
EAAAEDGDKR VTSYRDHGHM LACGMDPKGV MAELTGREGG YSKGKGGSMH MFSKEKHFYG
GHGIVGAQVP IGAGLAFSDK YRGNDRVTFA YFGDGAANQG QVYETYNMAE LWMLPVVFVI
ENNQYAMGTS VARSTKSPSL WERGAAYGIP GEEVDGMDVL AVKAAGEKAV AHCRAGKGPY
ILEVKTYRYR GHSMSDPAKY RTREEVQKVR EQRDAIEHVR EMLLSGNHAS EDELKAIDKE
IKAVVNEAAE FSRESPEPAL SELWTDIYAE A
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