| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2117 |
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| Symbol | soxB |
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| ID | 5713113 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2246632 |
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| End bp | 2247885 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641268039 |
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| Product | sarcosine oxidase subunit beta |
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| Protein accession | YP_001533454 |
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| Protein GI | 159044660 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | [TIGR01373] sarcosine oxidase, beta subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCATT TCTCCGCGAT GTCGCTGCTG AAAAATGCGC TTACCGGCCA CAAGAACTGG
CCCGAGCAAT GGCCCGACAA ACAGCCCAAG GACGAATACG ACGTCATCAT CGTCGGCGCT
GGCGGCCACG GGCTGGGCGC GGCCTACTAC CTGGCCAAGG AGCACGGCAT CACCAATGTC
GCCGTGATCG AGAAGGGCTG GCTCGGGGGT GGCAACACCG GCCGCAACAC CACGATCATC
CGTTCCAACT ATCTCTATGA CGAGAGCGCG AAGCTCTACG ATCACGCACT CGATCTGTGG
GAAAACCTGT CGACCGAGCT GAACTACAAC GTGATGTATT CCAAGCGCGG CGTGATGATG
CTGGCCCATA ACGTGCATGA CGTGCAGTCG TTCCAGCGCC ATATCCATGC CAACCGGCTG
AACGGCGTCG ACAACCAGTG GCTGACCCCA AAGCAGGCCA AGGAATTCTG CCCGCCGCTC
AATATCTCGC CCGATGCGCG CTATCCCGTG ATGGGCGCGG CCCTGCAAAA GCGCGCCGGG
ACCGCGCGCC ACGATGCGGT GGCCTGGGGC TATGCGCGGG CCGCGGCCAA GCGCGGCGTC
GACATCATCC AGAACTGCCC CGTGATCGCG ATCCGCCGTG CCGCCGATGG CTCGGTCGAG
GGCGTCGATA CCGCAAAGGG CTTCATCAAG GCCAAGAAGG TGGCCGTGTC CGCCGCCGGT
CACACATCGG TCGTGATGGA CAGCGCGGGC GTGCGGATGC CGCTGGAAAG CTACCCGCTC
CAGGCGCTCG TGTCGGAACC GATCAAGCCG GTCTTCCCCT GCGTCGTGAT GTCGAACACC
GTGCACGCCT ATATCAGCCA GTCCGACAAG GGCGAGCTGG TGATCGGCTC GGGCACCGAC
CAGTACACCA GCTATTCCCA GCGCGGCGGC CTGCCGCTGA TCGAACACAC GGTGTCGGCG
ATCTGCGAGG TCTTCCCGAT CTTCAACCGG ATGCGGATGC TGCGCAAATG GGGCGGCATC
GTGGACGTGA CCCCCGACCG GTCGGCCATT CTCGGCAAGA CCCCGGTCAA GGGGCTCTAC
GTCAACTGCG GTTGGGGCAC GGGTGGCTTC AAGGCGACCC CGGGGGCGGC GCACACGCTG
GCCTGGACCG TGGCCAAGGA CGAACCACAC CCGATCAACG CCCCCTTCAC GCTCGAACGC
TTCACCACCG GCCGTCTCAT CGACGAAGCC GCCGCAGCCG CTGTTGCGCA CTGA
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| Protein sequence | MTHFSAMSLL KNALTGHKNW PEQWPDKQPK DEYDVIIVGA GGHGLGAAYY LAKEHGITNV
AVIEKGWLGG GNTGRNTTII RSNYLYDESA KLYDHALDLW ENLSTELNYN VMYSKRGVMM
LAHNVHDVQS FQRHIHANRL NGVDNQWLTP KQAKEFCPPL NISPDARYPV MGAALQKRAG
TARHDAVAWG YARAAAKRGV DIIQNCPVIA IRRAADGSVE GVDTAKGFIK AKKVAVSAAG
HTSVVMDSAG VRMPLESYPL QALVSEPIKP VFPCVVMSNT VHAYISQSDK GELVIGSGTD
QYTSYSQRGG LPLIEHTVSA ICEVFPIFNR MRMLRKWGGI VDVTPDRSAI LGKTPVKGLY
VNCGWGTGGF KATPGAAHTL AWTVAKDEPH PINAPFTLER FTTGRLIDEA AAAAVAH
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