Gene Dshi_2049 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_2049 
Symbol 
ID5713044 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp2169530 
End bp2170309 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content68% 
IMG OID641267971 
ProductABC transporter ATP-binding protein 
Protein accessionYP_001533387 
Protein GI159044593 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1127] ABC-type transport system involved in resistance to organic solvents, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.558071 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGAGC CGGTGGAGAA CGTGATCCGG GTGCGCGGGG TGCGGACGCA GTTCGGCACG 
CATGTGGTCC ATGAAGACCT GGATCTGGAC GTGCGGCGGG GCGAGATCCT GGGCGTGGTC
GGCGGCTCGG GCACCGGCAA GTCGGTGCTG CTGCGCACGA TCGCGGGGCT GTTGCGGCCT
GCGGCGGGGC GGGTGGAGGT TCTGGGCACC GACATGCTGA GCGCCGACGA GGCGACGCGG
GCCGCGGTCG AGGCGCGCTG GGGCGTGATG TTCCAGGACG GTGCCCTGTT TTCCTCCCTG
ACCGTGCGCG AGAATGTCGA AGTTCCCATG CGCGCGATCC CGGGTCTGGA TGCGGCGACG
CGCCGGGCAT TGGCTGCGCT GAAGGTGTCG ATGGTGGGAC TGCCGCCGGT GGCGGAGGAC
AAATACCCCT CCGAGCTGTC TGGGGGGATG CGCAAGCGCG CGGGATTGGC GCGGGCGCTG
GCCCTCGACC CGGAGATCGT GTTCCTCGAC GAGCCGACCG CCGGGCTCGA CCCCATCGGG
GCGGCGGATT TCGACACGTT GATCAAGGGG CTGAGCACGG ATCTGGGCCT GACGGTCTTT
CTGGTCACCC ATGACCTTGA TACGTTGCAC GCGATCTGCG ACAGGATCGC TGTCCTTGCG
GAACGCAAGG TGCTGGTCAC GGGCACCATG GATGAGATGC TGAAGGTGGA TCACCCTTGG
GTGCACGCGT ATTTCCACGG CCCCCGTGCC CGGGCGGCGC TTGAGACGGC AGGCGGCTGA
 
Protein sequence
MAEPVENVIR VRGVRTQFGT HVVHEDLDLD VRRGEILGVV GGSGTGKSVL LRTIAGLLRP 
AAGRVEVLGT DMLSADEATR AAVEARWGVM FQDGALFSSL TVRENVEVPM RAIPGLDAAT
RRALAALKVS MVGLPPVAED KYPSELSGGM RKRAGLARAL ALDPEIVFLD EPTAGLDPIG
AADFDTLIKG LSTDLGLTVF LVTHDLDTLH AICDRIAVLA ERKVLVTGTM DEMLKVDHPW
VHAYFHGPRA RAALETAGG