| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2035 |
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| Symbol | |
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| ID | 5713030 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2155018 |
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| End bp | 2155782 |
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| Gene Length | 765 bp |
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| Protein Length | 254 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641267959 |
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| Product | putative gluconate 5-dehydrogenase |
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| Protein accession | YP_001533375 |
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| Protein GI | 159044581 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.0913776 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.102555 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGACG CACCTGCCTC CATGTTCGAT CTGACGGGCC GCGTGGCCTG CGTGACCGGG
GCCAGTTCGG GCCTCGGGCG GCGCGCGGCC ACGGTGCTGG CCCGCGCCGG AGCCTCGGTC
GTCGGCGTCG CGCGGCGTGC CGACGCGCTC GCAGCCTGGG AGGCCGAAAC ACCGGGCCGC
ACCGCCAGCG CCGCCTGGGA CGTGGCCGAC CGCGACAGCC TGCCGGACAT GGTGGAGGCA
ATCTCCGCAC CCTTCGGTGC GCCGGATATC CTGGTGCTGG CCGCGGGGAT CAACAATCGC
GAGCGGGCCG ATGCGGTCAC GGCCGCCGGC TGGGATGCCA CGCTGGCGCT GAACCTCACC
GCGCCCTTCT TCCTCGCTCA GGCGCTGGTG CCAGCCATGT CGGAGAAGGG CTGGGGCCGG
ATCGTCAATT TCGCCTCGCT CCAGACCACG CGCGCCTTTC CAGGCGGTGT CGCCTATGGC
GCCACCAAGG GCGGGATCGC GCAACTGACC CGCGCCATGG CCGAGGCCTG GTCCGCCCAG
GGGATCAATG CCAATGCCGT CGGACCGGGG TTTTTCAAGA CCGAACTGAC GGCACCCGTG
TTCGACAATC CCGCGCTGGC GCAGGAGCTT GCGGACAAGA CCTGCATCGG ACGCAATGGC
GTGCCAGGGG ATATCGACGG CCCGCTCTTG TTCCTGTGCT CGGACGCCTC GGCCTATGTC
ACGGGCCAGA TCCTGATGGT CGACGGGGGA TTCACCGCGA AATGA
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| Protein sequence | MTDAPASMFD LTGRVACVTG ASSGLGRRAA TVLARAGASV VGVARRADAL AAWEAETPGR
TASAAWDVAD RDSLPDMVEA ISAPFGAPDI LVLAAGINNR ERADAVTAAG WDATLALNLT
APFFLAQALV PAMSEKGWGR IVNFASLQTT RAFPGGVAYG ATKGGIAQLT RAMAEAWSAQ
GINANAVGPG FFKTELTAPV FDNPALAQEL ADKTCIGRNG VPGDIDGPLL FLCSDASAYV
TGQILMVDGG FTAK
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