Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_2033 |
Symbol | |
ID | 5713028 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 2152380 |
End bp | 2153708 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641267957 |
Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
Protein accession | YP_001533373 |
Protein GI | 159044579 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.101012 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.0941732 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTTGGC AGCAAATGGA CCAAACCGTC ATCCTGGGCT GGGATTTCTA TGGCCCGGTG ATCATGTTCG TCGCCCTCGT GGCCCTTGCC GTGCCGGTCT GGGCCGCCAT CGGCGCCTCG GCGATCCTGA TGCTTGTGTG GTCGGGCGCC CTGCCCCTGA GCCTCGTGGG CGAACGGCTG TTCTCGGGGA TCGACGCGTT TGCCCTGACG GCGGTGCCCC TCTTCATCCT GACCGGCGAC GCGCTTGTCC GCACGGGGTT GTCGCGCAAG TTTCTCGATG TGGCCGAGGC GCTCACGCAA TTCGCCAAGG GCGGGTTCGG ATCGGCGACG GTGCTGGTCT GCGGGATGTT CGCGGCGATC TCGGGCTCTG ACGCGGCGGG CGCCGCTGCC GTGGGGCGGA TGACCATCGC GCGGCTGGTC GAGTCGGGCT ATCCGCGGCC CTATGCCTGC GCTTTGGTGG CTGCGGGGGC CTGTACCGGC ATCCTGATCC CGCCCTCGAT CGCCTATATC ATCATCGGCC TCGTGCTGGG TATTTCGGCC TCGACCCTGT TCCTGGCGGC CGTCATTCCG GGCCTCGCGA TCCTGGTTTC GATCCTGGTG ACGAACATCA TCATGAACCG GCTCAACGGC TGGGAGGGCG GCGGCAATGT CTCGATGCCG GAGTATTTCT CCCGCCTCTG GACGGCGCTG AAGTCCGGCT GGTACGCCTT CATCGTGCCC GGCATCATCT TCTACGGCAT CTTCTCGGGG CGGATGACGC CGACAGAGGC CGGCGCGACG GCGGTCGTGG TCACCATCGT GATGGGTTTC GTGCTGGGCA CGCTGAAGCT GAGCGATTTT CCCGCGATGC TGGTGAGTTC GGCCAAGGTC AACGGGGTGA TCCTGCCGAT CATCGCCTTC TCTGTGCCGC TGGCCGAAGC GCTGGCCATC ATCGGCGTGC CGCAGGGCTT CGTCGCGGTG GCGACCGGTG TCAGCGAAGA GCCCTGGGTG CTGATCCTGA TGATGCTGGC CATTCTGGTC GCCGCGGGCT GCGTCATGGA AACCACGCCG AACATCGTGA TCCTGGCGCC CATCCTGCTG CCCTTGGCCG AAGAGATCGG CATGAACGAG ATCCAGTTCT GCATCATGAT GATCACCGCC CTGGGCGTGG GCTTCATCAC GCCACCGCTG GGGCTCAACC TGTTCGTGGT GTCGGGCATA ACAGGGGAAT CCATCCTGAA AATCGCCTAT CGGGCAGTCC CCTTCGTGTT TTTCATGCTG CTCGTCACCC TTATGATTGC CTATATTCCG GCAATCTCCA CCGCCCTTCT TCCAGACATC TTCAAGTAG
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Protein sequence | MLWQQMDQTV ILGWDFYGPV IMFVALVALA VPVWAAIGAS AILMLVWSGA LPLSLVGERL FSGIDAFALT AVPLFILTGD ALVRTGLSRK FLDVAEALTQ FAKGGFGSAT VLVCGMFAAI SGSDAAGAAA VGRMTIARLV ESGYPRPYAC ALVAAGACTG ILIPPSIAYI IIGLVLGISA STLFLAAVIP GLAILVSILV TNIIMNRLNG WEGGGNVSMP EYFSRLWTAL KSGWYAFIVP GIIFYGIFSG RMTPTEAGAT AVVVTIVMGF VLGTLKLSDF PAMLVSSAKV NGVILPIIAF SVPLAEALAI IGVPQGFVAV ATGVSEEPWV LILMMLAILV AAGCVMETTP NIVILAPILL PLAEEIGMNE IQFCIMMITA LGVGFITPPL GLNLFVVSGI TGESILKIAY RAVPFVFFML LVTLMIAYIP AISTALLPDI FK
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