| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2009 |
|---|
| Symbol | |
|---|
| ID | 5713004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 2128649 |
|---|
| End bp | 2129623 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641267933 |
|---|
| Product | putative phosphonates-binding periplasmic protein |
|---|
| Protein accession | YP_001533349 |
|---|
| Protein GI | 159044555 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01098] phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.449307 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0186123 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCA CAACCAAACT GCTGACCGGC GTTTCGATGG CGGCGATGCT GACACTGGGC
GGGGCCGCAT CGGCCCAGGA TTGCCCACGC GGCGATCTGG ACGAGCGTTT CTGCGACGTG
GATGGCGACT TGGTCGCCGA TATCCCGACC GATCCGTCGG AACTGGTCGA TCCCGACACG
CTGATCTTCG CCTACACGCC GGTGGAGGAC CCGGCGGTCT ATGCCGAAGC CTGGTCGGAC
TTCATCGACC ATCTGTCGGA GGTCACGGGC AAGGACGTGG TGTTCTTCCC CGTCCAGAGC
AACGCCGCCC AGATCGAGGC GATGCGCTCG GGCCGACTGC ACGTGGCGGG GTTCAACACC
GGGTCGAACC CGTTGGCGGT CAACTGCGCG GGCTTCCGGC CCTTCGCGCT GATGGCGGCG
ACAGATGGCA GCTTCGGCTA CGAGATGGAG ATCATCACCT ATCCCGGCTC CGGCATCGAG
ACGATCGAGG ACATCAAGGG CGGGCAGCTG GCCTTCACCT CGCCCACGTC GAATTCCGGC
TTCAAGGCGC CCTCGGCGAT CCTGAAGGCG GAGTATGGCA TGGAAGCCGA AAAGGATTTC
GAGCCCGTGT TCTCGGGCAA ACACGACAAT TCGATCCTCG GGGTGGCCAA CAAGGACTAT
CCGGCGGCGG CTATCGCAAA CTCGGTGCTG CACCGGATGA CCGAGCGCGA GGTCGTGAGC
GAGGACCAGA TCGTGTCGAT CTACACTTCG CAGACCTTCC CGACCACGGG GTATGGCACC
GCCCATAACC TGACGCCGGA GTTGCAGGAC CAGATCCGCG ATGCCTTCAT CAACTTCGAG
TGGGAAGGCA CGTCGCTGGA AGAGGAATTC TCGAAATCCA ACGAGGGCCA GTTTTTGCCG
ATGAACTACA AGGAGTTCTG GGCGGTGATC CGGCAGATCG ACGAGGCCAA CGGCGTTTCC
TACGCGTGCG AATGA
|
|---|
| Protein sequence | MNITTKLLTG VSMAAMLTLG GAASAQDCPR GDLDERFCDV DGDLVADIPT DPSELVDPDT
LIFAYTPVED PAVYAEAWSD FIDHLSEVTG KDVVFFPVQS NAAQIEAMRS GRLHVAGFNT
GSNPLAVNCA GFRPFALMAA TDGSFGYEME IITYPGSGIE TIEDIKGGQL AFTSPTSNSG
FKAPSAILKA EYGMEAEKDF EPVFSGKHDN SILGVANKDY PAAAIANSVL HRMTEREVVS
EDQIVSIYTS QTFPTTGYGT AHNLTPELQD QIRDAFINFE WEGTSLEEEF SKSNEGQFLP
MNYKEFWAVI RQIDEANGVS YACE
|
|---|
| |