| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2000 |
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| Symbol | |
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| ID | 5712995 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2119423 |
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| End bp | 2120445 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641267924 |
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| Product | D-xylose-binding periplasmic protein xylF |
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| Protein accession | YP_001533340 |
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| Protein GI | 159044546 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02634] D-xylose ABC transporter, substrate-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.121993 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGTAAAG CAATTCTCGC GGCCGCCATC GTCGCGGCCG GTGTCACCAC ATCGGCCTAT
GCCGATGTCA CGGTCGGTGT CAGCTGGTCG AATTTTCAGG AAGAGCGTTG GAAGACCGAC
GAGGCCGCCA TCAAGGCCGC GCTCGAAGCC GCCGGCGCCA CTTATGTTTC GGCGGACGCG
CAGTCGTCCT CGGCCAAGCA GCTGTCGGAT GTGGAGAGCC TGATTGCGCA GGGTGTCGAT
GCCCTGATTA TTCTGGCCCA AGACAGCCAG GCCATCGGCC CAGCCGTGCA GGCCGCGGCC
GACGAGGGGA TCCCGGTGGT TGGCTATGAC CGCCTGATCG AGGATCCGCG GGCCTTCTAC
CTGACCTTCG ACAACGTGGA AGTGGGCCGG ATGCAGGCCC GCGCCGTGCT GGAGCAGGCC
CCCGAGGGCA ATTACGTGAT GATCAAGGGC TCGCCCACGG ACCCGAACGC GGACTTCCTG
CGCGGCGGGC AGCAGGAGAT CCTGCAGGAT GCCATTGACG CAGGCAAGAT CACCATCGTG
GGCGAGGCCT ATACCGATGG CTGGCTGCCG GCGAACGCCC AGCGGAACAT GGAGCAGATC
CTGACCGCCC AGGACAACCA GGTGGACGCG GTCGTGGCCT CCAACGACGG GACCGCGGGT
GGCGTGGTCG CGGCCCTGAC CGCCCAGGGC ATGGAAGGGA TCCCGGTCTC GGGCCAGGAC
GGTGATCATG CCGCGCTGAA CCGGGTGGCC AAGGGCACCC AGACCGTGTC CGTGTGGAAG
GACGCGCGGG ATCTGGGCCG GGCCGCGGGT GAGATCGCCG TGGCCATGGC GAACGGCACC
GCGATGGCGG ATATCGAGGG TGCGACCTCC TGGACCTCCC CCGGGGGGAC GGAGTTGACC
GCCCGGTTCC TGGCGCCGGT GCCGGTGACC GCCGACAACC TTACCGCGGT GGTCGATGCC
CAGTGGATCA CGCAAGAGAC CCTGTGCCAG GGCGTGACCG ACGGTCCGGC GCCCTGCAAC
TGA
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| Protein sequence | MRKAILAAAI VAAGVTTSAY ADVTVGVSWS NFQEERWKTD EAAIKAALEA AGATYVSADA
QSSSAKQLSD VESLIAQGVD ALIILAQDSQ AIGPAVQAAA DEGIPVVGYD RLIEDPRAFY
LTFDNVEVGR MQARAVLEQA PEGNYVMIKG SPTDPNADFL RGGQQEILQD AIDAGKITIV
GEAYTDGWLP ANAQRNMEQI LTAQDNQVDA VVASNDGTAG GVVAALTAQG MEGIPVSGQD
GDHAALNRVA KGTQTVSVWK DARDLGRAAG EIAVAMANGT AMADIEGATS WTSPGGTELT
ARFLAPVPVT ADNLTAVVDA QWITQETLCQ GVTDGPAPCN
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