| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1999 |
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| Symbol | xylH |
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| ID | 5712994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2117998 |
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| End bp | 2119305 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641267923 |
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| Product | xylose transport system permease protein |
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| Protein accession | YP_001533339 |
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| Protein GI | 159044545 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4214] ABC-type xylose transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.222102 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.247707 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGATG CATCCCCGAC CGAGAGCCGC CTGCCCAGCC GGGCCAAGCG CAGTTTCCTG
CAGACCCTGG AGTTGGATAC CCGCCTTCTG GGCATGATCG GGGCCTTCGT TCTGGTGTGC
CTGGTCTTCA ACCTGCTGAC AGACGGGCGG TTCCTGACGG CGCGGAACAT CTTCAACCTG
TCGATCCAGA CCGTGAGCGT GGCGATCATG GCCACGGGCA TGGTGTTCAT CATCGTCACG
CGGCATATCG ACCTGGCGGT GGGGGCGTTG CTGGCCACCT GTTCGGCGGC CATGGCGATG
ACCCAGACCG CGATCCTGCC GCAGGTCTTC GGGCTGGAGT TGGGCCATCC GGCGATCCCG
TGGATCGCGA TGCTGGTGGG CCTGGTCACG GGCACGGTGA TCGGGGCGTT CCAGGGCTAC
CTGGTGGGGT ATCTGATGAT CCCGGCCTTC ATCGTGACCC TGGGCGGTCT GCTCGTGTGG
CGCAACGTGG CCTGGTACAT GACAAACGGG CAGACCATCG GGCCGCTCGA TCCGACCTTC
ATGACCCTTG GCGGCATCAA CGGGACGCTG GGCGCGACCC TGAGCTGGAT CGTGGGTCTC
GTCGCGGTGG TCGCGGCCTG CTGGGCGCTG TGGTCGGGGC GCAAGAACAA GATCGCCCAT
GACGCGCCGG TCAAGCCCGT CTGGGCGGAA CTGACGGTGA TGGGGGTGGT GTCGGTCGCG
ATCCTCGGGT TCGTGGCGAT CCTGAACAGC TACGAGGTGC CCACGGCGCG GCTGCGGCGG
CTCTTCGAGG CGCGCGGCGA GGTGATGCCC GAGGGCTATA CCGAGGTTTA CGGCATTCCC
TATTCCGTGC TGCTGCTGAT CGCGGTGGCG GTGGCGATGA CGGTGATCGC CAAGAAGACC
CGGTTCGGGC GCTACATCTT CGCCACTGGC GGCAACCCGG ACGCGGCCGA GTTGTCGGGG
ATCAACACGC GGATGCTGAC GGTGAAGGTA TTCGCGTTGA TGGGGGCGCT CTGTGCGATT
TCGGCCATCG TGGCCTCGGC GCGGCTGACA AACCATTCCA ACGATATCGG CACGCTCGAC
GAGCTGCGCG TGATCGCGGC GGCGGTGATC GGGGGCACGG CGCTGGCGGG CGGTATCGGC
ACGATCTATG GCGCGATCCT CGGTGCGCTG ATCATGCAGT CGCTGCAATC GGGCATGGCC
ATGGTCGGCG TCGATGCGCC GCTGCAGAAC ATCGTCGTGG GCACGGTTCT GGTGGCCGCG
GTTCTGATCG ACATCCTCTA TCGCAAGCGG ATGGGAGCGA AGTCATGA
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| Protein sequence | MSDASPTESR LPSRAKRSFL QTLELDTRLL GMIGAFVLVC LVFNLLTDGR FLTARNIFNL
SIQTVSVAIM ATGMVFIIVT RHIDLAVGAL LATCSAAMAM TQTAILPQVF GLELGHPAIP
WIAMLVGLVT GTVIGAFQGY LVGYLMIPAF IVTLGGLLVW RNVAWYMTNG QTIGPLDPTF
MTLGGINGTL GATLSWIVGL VAVVAACWAL WSGRKNKIAH DAPVKPVWAE LTVMGVVSVA
ILGFVAILNS YEVPTARLRR LFEARGEVMP EGYTEVYGIP YSVLLLIAVA VAMTVIAKKT
RFGRYIFATG GNPDAAELSG INTRMLTVKV FALMGALCAI SAIVASARLT NHSNDIGTLD
ELRVIAAAVI GGTALAGGIG TIYGAILGAL IMQSLQSGMA MVGVDAPLQN IVVGTVLVAA
VLIDILYRKR MGAKS
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