| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1998 |
|---|
| Symbol | |
|---|
| ID | 5712993 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2117255 |
|---|
| End bp | 2118001 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641267922 |
|---|
| Product | ABC transporter ATP-binding protein |
|---|
| Protein accession | YP_001533338 |
|---|
| Protein GI | 159044544 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0341354 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.212812 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCCC TGGTGGAACT GGACGATATC TCGATCTCCT TCGGGGGGAT TCGCGCGGTG
GACGGCGTGT CGCTGGACCT TTACCCGGGT GAGGTCGTGG GGCTTTTGGG CCATAACGGG
GCCGGAAAAT CGACGCTGAT CAAGATCCTG GCGGGGGCGT ACCGCAAGGA TAGCGGCGAG
ATCCGGATCA ACGGCAAGAA GGCCGAGATC AACAGCCCGA GGGATGCGCG GCGCTACAAT
ATCGAGACGA TCTACCAGAC GCTGGCGCTG GCCGACAACC TCGATGCGTC CTCGAACCTG
TTTCTGGGGC GGGAGTTGAC CACGCGCCTC GGCTTTGTGG ACGACACGCG GATGGAGGCG
GAGACGCGCA GGATCATGGC GCGGCTGAAC CCGAACTTCC AGAAACTGAG CGAGCCGGTG
AGTGCCCTGT CGGGCGGGCA GCGGCAATCC GTTGCCATTG CGCGGGCGGT CTATTTCAAC
GCGCAGATCC TGATCATGGA CGAGCCGACG GCGGCGCTGG GCGTGCACGA GACGCAAATG
GTCGCGGACC TGATCAAGGA GCTCAAGGCG CAGGGGCTGG GGATTTTCCT GATCTCCCAC
GACACGCGCG AGATGCTGGA GCTGTGCGAC CGGGTGTCGG TGATGAAGAA CGGCAAGCTG
GTGGGGACCG AACGGGTCGA GGACGTGACG GAGGACGACA TCCTGTCGAT GATCATTCTG
GGCAAGAACC CCAAGGCGGT GGCCTGA
|
|---|
| Protein sequence | MTPLVELDDI SISFGGIRAV DGVSLDLYPG EVVGLLGHNG AGKSTLIKIL AGAYRKDSGE
IRINGKKAEI NSPRDARRYN IETIYQTLAL ADNLDASSNL FLGRELTTRL GFVDDTRMEA
ETRRIMARLN PNFQKLSEPV SALSGGQRQS VAIARAVYFN AQILIMDEPT AALGVHETQM
VADLIKELKA QGLGIFLISH DTREMLELCD RVSVMKNGKL VGTERVEDVT EDDILSMIIL
GKNPKAVA
|
|---|
| |