| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1971 |
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| Symbol | |
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| ID | 5712965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2084030 |
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| End bp | 2085007 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641267894 |
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| Product | putative TRAP-transporter extracellular solute-binding protein |
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| Protein accession | YP_001533311 |
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| Protein GI | 159044517 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.418895 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.696077 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCTGA AGACCCCGAT TGCGTTCTCG ACGGCCCTGC CGGGGCTGGG CACGCCGATC
CCGCGGGTGG CCGATGCGCT GGCGACCATG TCCGGCGGAA CGCTGAAGAT GAAGGTGTAC
GAGCCCGGCA AGCTGGTCCC GGCCTTCGAG ATCCTGGATG CGGTGTCCTC GGGCAAGATC
AACTCCGGCT ACACCACCGC CGGGTATTGG GCGGGCAAGA TCCCGGCGGC CCCCCTGTTC
TCGGCTGTGC CCTTTGGCCC CGAGGCGGGC GAGTACATGG CATGGCTCTA TTACGGCAAC
GGCATGGATC TCTATCAGGA GATGTATGAC CAGGCCGGCT ACAACGTGCA TGTGCTGCCC
TGCGCGATCC TGGCGCCCGA AACCTCGGGC TGGTTCGCCA AGGAGATCAC GTCGGCCGAA
GATCTGAACG GGCTGAAGAT GCGGTTCTTC GGGTTGGGCG GCAAGGTGAT GCAGAAGTTG
GGCGTGGCCA CATCGCTGCT GCCCGGCGGC GAGATCTTCC CGGCGCTGGA GAAGGGCGCC
ATCGACGCGA CCGAGTTCTC GATGCCCGCC ATCGATGCAC GGCTCGGTTT CCACAAGCTG
GTGAAGTTCA ACTACTTCCC CGGCTGGCAC CAGCAGGCGA CCGTGTTCGA GTTGATGATC
AACAAGGACG TCTGGAACGA CGCCAGCGAG CAGCACAAGG CGATCATCGA GAGCGCCTGC
AAGGCGTCCA TGGCCGACAG CTTCGCCGAG GGTGAGGCGA TCCAGCACGC GGCGCTGATC
GACAACGTGG AAAAGAACGG TGTCGAGATG AAGCAGTGGT CGCCGGAGAT GCTAGAGCTG
TTCCGGGCGA CTTGGGACGA GGTGGCCGCA GAAGAAGCCG CGAACGATGA ATTCTTCGCC
AAGGTACTGG CGGACATGAC CACGTTCCGC GACGGCTACG CTCTGTGGAA GCGCAACGCC
TTCCTGCCGC GGGACTGA
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| Protein sequence | MLLKTPIAFS TALPGLGTPI PRVADALATM SGGTLKMKVY EPGKLVPAFE ILDAVSSGKI
NSGYTTAGYW AGKIPAAPLF SAVPFGPEAG EYMAWLYYGN GMDLYQEMYD QAGYNVHVLP
CAILAPETSG WFAKEITSAE DLNGLKMRFF GLGGKVMQKL GVATSLLPGG EIFPALEKGA
IDATEFSMPA IDARLGFHKL VKFNYFPGWH QQATVFELMI NKDVWNDASE QHKAIIESAC
KASMADSFAE GEAIQHAALI DNVEKNGVEM KQWSPEMLEL FRATWDEVAA EEAANDEFFA
KVLADMTTFR DGYALWKRNA FLPRD
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