| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1966 |
|---|
| Symbol | lpdA |
|---|
| ID | 5712960 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2074131 |
|---|
| End bp | 2075873 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641267890 |
|---|
| Product | dihydrolipoyl dehydrogenase |
|---|
| Protein accession | YP_001533307 |
|---|
| Protein GI | 159044513 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes
[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.258169 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0783557 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACATTA AAGTACCCGA TATCGGGGAT TTCACCGATG TGCCGGTCGT CTCGATCCTT
GTGGCCGTGG GCGACACGGT GGCCGAGGAA GACCCGCTGA TCGAGCTGGA GAGTGACAAG
GCGACCATGG AGGTGCCGTC ACCGGCCGCC GGTGTCGTCA AGGAGATCAA GGTGGCCGAG
GGCGACAACG TCTCGGAAGG CACCGTGATC ATGGTGTTCG AGAGTTCAGG CGCCGAAGAA
GCCCCGAAAG GGGCTGATGA GGCCCCCGCA GCCGCCGCTG CCCCCGAGGC CGTGGCCGCG
ACCGGTACCG CGACCGGCCC GGGGGATGTG CATGGCGAGG TGGTGGTGCT GGGCTCCGGC
CCCGGGGGCT ACACCGCGGC GTTCCGGGCG GCGGATCTGG GCAAGAAGGT GGTTCTGATC
GAGCGCTACC CGTCTCTGGG TGGGGTCTGC CTCAACGTCG GCTGTATTCC GTCCAAGGCG
CTTCTGCATG TCGCCAAGGT CATCACCGAG GCTGAAGAGA TGGGCGCGCA CGGCGTCAGT
TTCGGCAAGC CGAAGGTGGA TCTGGACGAA TTGCGCGCCT TCAAGGACAG CGTGATCGGT
CAGTTGACCG GCGGCCTGAG CGGTTTGGCC AAGGGCCGCA AGGTCGAGGT CGTCACCGGC
TATGGCAAGT TCACCGGGCC GAACATGATC GCGGTGGAAG GCGAGGATGG CGTCACGACG
GTCAGCTTCG ACCAGTGCAT CATCGCGGCA GGCTCCGAGC CGGTGAACCT GCCGTTTCTG
CCCGAGGATG ACCGGATCAT CGACAGCACC GGCGCGCTGG AGCTCAAGGA CATCCCCAAG
CGGATGCTGA TCCTGGGCGG CGGTATCATC GGGCTGGAAA TGGCCTGTGT CTATGATGCG
CTGGGCTCGG ACATCACCGT GGTCGAGTTC ATGGATCAGC TGATGCCGGG GGCCGACAAG
GACATCGTCA AGCCGCTGCA CAAGCGGATC GAGGGCCGGT ACGAGAACAT CCTGCTCAAG
ACCAAGGTGA CCGGGGTCGA GGCGCTCAAG AAGGGGCTGA AGGTCACTTT CGAGGACGCC
AAGGGTGAGC TCACCACGGA CACCTTCGAC AAGGTGCTCG TGGCCGTGGG GCGCAAGCCG
AACGGCGCGC TGATCGATGC CGAGAAGGCC GGGGTCGCCG TGGACGAGCG CGGCTTCATC
GCCGTGGACA GCCAGCAGCG CACGGGTGTT GCGCATATCT TCGCCATCGG TGACCTGGTG
GGCCAGCCGA TGCTGGCGCA CAAGGCGGTG CATGAGGGCA AGGTCGCGGC AGAGGTCTGC
GCGGGTCACA ACCGCCATTT CGATGCGCGG CTGATCCCCT CCGTGGCCTA TACCGACCCT
GAGGTCGCCT GGTGCGGCGT GACGGAGACC GACGCCAAGG CCAAGGGCAT CGCCTACGAG
AAGGGGGTCT TTCCCTGGGC GGCGTCGGGG CGGTCCCTTT CCAATGGCCG GTCCGAGGGG
ATTACGAAGC TGCTGTTCGA CCCCGAGGAC GACCGGGTGA TCGGGGCCTG CATCGTGGGC
ACCAATGCGG GCGATCTGAT CTCGGAGGTG GCGCTGGCCA TCGAAATGGG CGCGGATGCG
GTCGATCTGG GCCACACCAT CCACCCGCAC CCGACCCTGT CGGAGACGGT GAATTTCGCC
GCCGAGATGT TCGAGGGCAC GATCACCGAC CTGATGCCGC CGAAGAAGAA AAAGGCCCAC
TAG
|
|---|
| Protein sequence | MDIKVPDIGD FTDVPVVSIL VAVGDTVAEE DPLIELESDK ATMEVPSPAA GVVKEIKVAE
GDNVSEGTVI MVFESSGAEE APKGADEAPA AAAAPEAVAA TGTATGPGDV HGEVVVLGSG
PGGYTAAFRA ADLGKKVVLI ERYPSLGGVC LNVGCIPSKA LLHVAKVITE AEEMGAHGVS
FGKPKVDLDE LRAFKDSVIG QLTGGLSGLA KGRKVEVVTG YGKFTGPNMI AVEGEDGVTT
VSFDQCIIAA GSEPVNLPFL PEDDRIIDST GALELKDIPK RMLILGGGII GLEMACVYDA
LGSDITVVEF MDQLMPGADK DIVKPLHKRI EGRYENILLK TKVTGVEALK KGLKVTFEDA
KGELTTDTFD KVLVAVGRKP NGALIDAEKA GVAVDERGFI AVDSQQRTGV AHIFAIGDLV
GQPMLAHKAV HEGKVAAEVC AGHNRHFDAR LIPSVAYTDP EVAWCGVTET DAKAKGIAYE
KGVFPWAASG RSLSNGRSEG ITKLLFDPED DRVIGACIVG TNAGDLISEV ALAIEMGADA
VDLGHTIHPH PTLSETVNFA AEMFEGTITD LMPPKKKKAH
|
|---|
| |