| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1958 |
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| Symbol | |
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| ID | 5712952 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2052491 |
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| End bp | 2055133 |
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| Gene Length | 2643 bp |
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| Protein Length | 880 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641267883 |
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| Product | putative NAD-dependent epimerase/dehydratase |
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| Protein accession | YP_001533300 |
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| Protein GI | 159044506 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0262576 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.00141398 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGCGTAAAG AAGGCGGCTC AGACGGGGTC GATCCGCTGC GGGGTGTGCG GCCGCACCCG
GAGGCGGGCC CGGCCCTGAC CGCGGGCAAT TTCCGGCGTC TGGCCAAGAA CGGCATCGGC
GATCCGGCCA ATGCCTATGT CCACGGCATG GAGTATTTCG AGGGCCGTCT TTATTGTGGC
ATGACCCGCA ACTCATTCAA ACTGCTCAAC CTTTTCCCGC CGATTGACCC GCCTGCGCTG
GACCCCTGGC CGGTGGACGT GCCCCCCAAT GTGCGCGATC TCGACATGCA GGGCCAGATC
TGGCGCTGGA CCCCCGAAGA CGACAGTTGG GAAATGGCCT ATCGCTCGCC GCTGATCGAG
GGCAAGACCG GAGAGGAGGC GCCGCGCGAC CTCGGCTACC GCGGCATGCG GGTGTTCCAG
GGCAAGTCCG ACCGCAAGCC GAACCTTTAT GTCTCGACCA TGTCCACGGT GCTGCGCGGC
TGTGCGGCCC ATGTCCTGCG CTCCGAGGAC GGGCTGAATT TCGAGCCTGC CTGCGAGCCG
GGCATCGGCA ACGACAACAT CTCGACCTTC CGGGAGCTGG TGGATTTCGA CGGCTACCTC
TACGCGCCCC CCGCGGGCGA GGGGATCCAG TTCAACTCCA ACCGCACCGG CGTGCTGAAA
CGCTCCAACG ACCCGCGCCC CGGCAACTGG GAGACCGCCT GCGACCTGGG CTTCGGCGAC
AAGACCAACA ACGGCATCTT CATGATGGCC AAGGCCAACG ACCAGCTCTA TGCCGGGACG
TTCAACAATT ACGAAGGCTA CCAGGTCTGG ACCACGCCGC GGTGCGGCGA CGGGCCCCTG
CAATGGCGCC GGGTGATCGA GAAGGGCGCC TATCGCGGCC CGCTGTCGGA GATCGCCATG
GGCATGGTGG AATTCAACGG CGCACTCTAT GTCGGCTCCT CGATCCAGAA CGGCGGCTAT
GACCGCACCA ACCTGGTGGG TCCCGGCGCG GGGGAAATCA TCCGCATCTG GCCCGATGAC
AGCTGGGATC TGCTGATCGG GATGCCGCGG GACACGCCGC AGGGGTTCAA ATACCCGCTC
TCGGGGATCG CACCGGGCTT CGACAACATC TTCTCGGGCT ACACCTGGCG GATGTGCGTC
CATGACGGCT GGCTTTATGT CACCACCTTC GACTGGTCGG TCTTCCTGCA ATACGCCCAC
CGCCCGTCGC CCACGGCCAA ACGACTGGTC GACGCGGTCA GCTTCGAGCA GCTGGCGGAG
GTCGGCGGCG GCTTTGAGCT CTGGCGCACC AAGGACGGGG TGAACTGGCA GCCGGTGACG
ATCAACGGGC TCAACAACCC CTACAATTAC GGCGGCCGCA CCATGGTCTC CACCCCGCAC
GGCCTGGCGG TGGGCACCGC CAACGTGTTC GGCGGCAAGA GCCCGGCGCG CTTCGCCTCG
GGCTGGCAAT ATGTCGAGAA CCCCGATGGC GGCACCGAGA TCCTGCTGGG CGATCACAAC
ATCAAGCCCT ACGAGACCCC CGCACCCGTG CGCAGCGCCG AGGTGGCCGA TATCGCCGCC
CCCAAACGCA CCCGCCGCTG CGACATCGCG ATCACCGGCT GCACCGGGTT CATCGGCACC
AACCTGATCC CCAAGCTGTT GGCGAAGGGC TACACCATCC GGGCGCTGGT GCTGCCGGGC
ACGGGCGACG TGCTGCCCGA CAGCCCGCAG ATCGAGCTGA TCGAGGGCGG GCTGGGGGAT
ACCGACGCGC TGGCCCGGCT GGTGGAGGGC GCGCGGGTTG TCCTGCACAT GGCCGCGCGG
CTGGCGGGGT CCTGCACCCT GGTCGAGCTG CGCGAGACCA ACGTGGAAGG CACCCACAAC
CTGATCCGGG CGGTCAACGC TGCGGGCGCC TGCGCGCGCT TTGTGTTCTG CTCCTCGGTC
GCGGCCTACC AGAACCAGTT CGCCGAGGCG GAATGGCCGA TCCACGAAAG CTCCGCCCTG
CGTGTGGATG GCGGGCACGA CCTGTCCGAT TACGGCATGA CCAAGATCGC GGGCGAGAAC
CTCGCGCGGT TCTACGGCCG CAAGTTCGGC TACGAGCACG CCATCCTGCG CTTTGCCCTT
GTCTACGGCG TGGGCGATCC GCTGGTCGAT CCCATGGTCA AGACCGAAGC GCCCAAGCCG
GAGTTCGGCA AGGGCCAGCA GGGCGAGCAG CCGCGCCAGT TCGTCCATGT CACCGACGCG
GTGGAGGCGA TCCTGCGCGC CTGTTTCGAG CCCGGCGCCC GGAACGAGAC CTTCACCGTG
GCGGGGCCGG ACGTGATCAC CTATCGTGAC ATGGGGCGGA TGACCCGCAT CGCGATCGGC
AAGGCCAGCA AGGATGACCT GGACCCGGAC CGCACCCGCG TCTGGCGCCG CTACGTGCAA
CAATACGATA TTTCGAAAGG GAAGAATAAA CTCAAATTTT ATCCCTCAGT CCCGTTTGCA
GAGGGCTTGC GGGAGATTGT CGAGGCGGCC CAGGCCAAGG GGGAGCTTCC GCGCCCCGGC
CAGGCGCCGC GCCTGGCCAG ACCGGGTGTC GACCGTCCCC AGCGCGTCCT GACCGAGGGG
CAGGGCGCGG ATGCGGCGGA CCTGCCACAA GAGACAAGGG GCGCTGCGAT CAGCGCCGAG
TAA
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| Protein sequence | MRKEGGSDGV DPLRGVRPHP EAGPALTAGN FRRLAKNGIG DPANAYVHGM EYFEGRLYCG
MTRNSFKLLN LFPPIDPPAL DPWPVDVPPN VRDLDMQGQI WRWTPEDDSW EMAYRSPLIE
GKTGEEAPRD LGYRGMRVFQ GKSDRKPNLY VSTMSTVLRG CAAHVLRSED GLNFEPACEP
GIGNDNISTF RELVDFDGYL YAPPAGEGIQ FNSNRTGVLK RSNDPRPGNW ETACDLGFGD
KTNNGIFMMA KANDQLYAGT FNNYEGYQVW TTPRCGDGPL QWRRVIEKGA YRGPLSEIAM
GMVEFNGALY VGSSIQNGGY DRTNLVGPGA GEIIRIWPDD SWDLLIGMPR DTPQGFKYPL
SGIAPGFDNI FSGYTWRMCV HDGWLYVTTF DWSVFLQYAH RPSPTAKRLV DAVSFEQLAE
VGGGFELWRT KDGVNWQPVT INGLNNPYNY GGRTMVSTPH GLAVGTANVF GGKSPARFAS
GWQYVENPDG GTEILLGDHN IKPYETPAPV RSAEVADIAA PKRTRRCDIA ITGCTGFIGT
NLIPKLLAKG YTIRALVLPG TGDVLPDSPQ IELIEGGLGD TDALARLVEG ARVVLHMAAR
LAGSCTLVEL RETNVEGTHN LIRAVNAAGA CARFVFCSSV AAYQNQFAEA EWPIHESSAL
RVDGGHDLSD YGMTKIAGEN LARFYGRKFG YEHAILRFAL VYGVGDPLVD PMVKTEAPKP
EFGKGQQGEQ PRQFVHVTDA VEAILRACFE PGARNETFTV AGPDVITYRD MGRMTRIAIG
KASKDDLDPD RTRVWRRYVQ QYDISKGKNK LKFYPSVPFA EGLREIVEAA QAKGELPRPG
QAPRLARPGV DRPQRVLTEG QGADAADLPQ ETRGAAISAE
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