| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1957 |
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| Symbol | |
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| ID | 5712951 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2051005 |
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| End bp | 2052432 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641267882 |
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| Product | hypothetical protein |
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| Protein accession | YP_001533299 |
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| Protein GI | 159044505 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00211883 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00150316 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCGATA CTCAGGAATG GACACCGAAC GTTCAGCAAG TTGGTGGCAA TCAGAACGAA
GCCATGAACT ACGTCCGCAG TCTGCTGCGC GAGGGCCGCA CGGACGAGGC GCGGGCCGAG
TTGCAGATGA TGATCGAGGC AGACCCCCAG GACACCCGGG CGATGATGGC CTTCGCGATG
TCGCTGGTGC GCGAGCAGCG GCTCGAAGAG GCCGCGCCGT ATGTCGAGCG CGCGCTCGAG
GTCGAGCCGG GCAATACCAC CGCCGCCCTG ATGGGCGCCC AGATCGGCGT GCGCGGCGGC
AATGCCGAAT ATGCCGAGGC GCATTACCAC AAGGCGCTGC AGGCCGATCC GCGCAACATG
CGCGCGCTGA TGGGGTTGGC ACGGCTGCAC GGCCAGAACC AGAAGCCCGA GGCGGCGATC
GAGGTGCTGC AGACCGCGCT GGAGGTGGAT CCGCAATCCG CCCGTGTCCG GCGCCAGTTG
GCCACACTGC TGCAGCGGAC CGAGAAGACC GAAGAGGCCA AGGCGCAGCT GCGCGCGGCG
CTCACCGCGA ACCCGAACGA CCAGGGCGCG TCGGTGCAGC TGGCCAATAT CTGCATGCGC
GCCGGGGATA CCGCCGAGGC GATCCAGGTG CTCGAGACCG CGCTCGAAGC CCAGCCCGAC
AATCGTCGCC TGACCATGTC GCTGGGCCGG ATGCGCCTGC GGGCGGAGGA TTACGCCGGG
GCCGAGGCGA CCTTGCGGCC CCTGACCACC GGGCAGCGCG GCGGCATGGC GCGGATCGCG
CTGGTCCAGG CGCTGATCCC GCAGGGCAAG CTGACCGAGG CGCGGACGCT GCTGGCAAGC
TCCTCGCGCG GGGCGCGGAC GCCCTCGCTG GTGCATCGTC TCTATGGCGA CGCGTTCGTG
GCCGAAGAGA AATGGAGCGC GGCGGAGAAA TCCTATCGCG CGGCGGTCTC GGCCCTGCGC
GAAGGCGGCG ACGAGATGCT GGCCAGGATC GACGCCCAGA AGGCCGCCAA CCCCAAGGCG
ACGGGCGCGG ACCTGATGAA GATCTACACC GACGCGTTCG AGGCGCGCCG GGCCGAGCAG
GTCGCGCAGC GCCAGGCCCA GGATCCGGCC GAGGCGCGCG AACGGCGCAG GGCCGCCCGG
GCGGAGCGGC GCGACGGTCC CAATGCGGAG CGGCGTCGCC AGGTGTTGCA GCGGCTTGCC
CAGCAGCGGC GCGCCAACAA TGCGACCGGC ACCGCGGCGG GGCCCCAGGC CGGCGGCGGA
TTGCGCGCCC GCATCCAGGA GCGGCGCGCC CAGCAAGCGG CCGGGACCGC CCCGGCGGCC
GCCGGCGGCG TGACCGGGGA GGTGATCCCG CCGCGCGGTG GCGGGGGCGG CCGGTTGCGC
AACCTGATCG CCCGGCGGCG GGGCACCCCC CCGGGCGCCC AGTCCTGA
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| Protein sequence | MSDTQEWTPN VQQVGGNQNE AMNYVRSLLR EGRTDEARAE LQMMIEADPQ DTRAMMAFAM
SLVREQRLEE AAPYVERALE VEPGNTTAAL MGAQIGVRGG NAEYAEAHYH KALQADPRNM
RALMGLARLH GQNQKPEAAI EVLQTALEVD PQSARVRRQL ATLLQRTEKT EEAKAQLRAA
LTANPNDQGA SVQLANICMR AGDTAEAIQV LETALEAQPD NRRLTMSLGR MRLRAEDYAG
AEATLRPLTT GQRGGMARIA LVQALIPQGK LTEARTLLAS SSRGARTPSL VHRLYGDAFV
AEEKWSAAEK SYRAAVSALR EGGDEMLARI DAQKAANPKA TGADLMKIYT DAFEARRAEQ
VAQRQAQDPA EARERRRAAR AERRDGPNAE RRRQVLQRLA QQRRANNATG TAAGPQAGGG
LRARIQERRA QQAAGTAPAA AGGVTGEVIP PRGGGGGRLR NLIARRRGTP PGAQS
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