| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1956 |
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| Symbol | |
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| ID | 5712950 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2049974 |
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| End bp | 2050936 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641267881 |
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| Product | putative NAD-dependent epimerase/dehydratase |
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| Protein accession | YP_001533298 |
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| Protein GI | 159044504 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.000864089 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00126231 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCGCATTC TCGTGACCGG ACCGACCGGC GCCATCGGGC AATATGTCCT CGAAGGACTG
ATGCAGACCG ACCATGACGT GCGCGTGCTG TCCCTGCCGG ACAGCCTGCA CCGCATCAAT
TTCCGCGACC GGATCGAGAT CGTGATGGGG GAGCTGTCGG ACGACATCTC CCTCGCCGAG
GCGGTGGAGG GGGTCGACAT CATCTACCAT TGCGCCCTGG TGGGCCCGCC CCCGGCGATG
TCGGCCGATC ACATGATGCA TGTGAACGCC GAGGGCACCC GCAACCTGCT GCGCCATGCG
GCGGGCCGGG TGCAGCGTGT CGTGCTGTGT AGCTCGAACA ACGTCTACAC CCCGCACCGC
GCGCCCGCCA TGTGGCCGCT GCTGGACGAT GCCCTGCGCG AGGCCCATGG CAACCCGCAA
CAGGTGGCGC TGGGCGAGTC GCTGATCGCC GCCGAGGATG CGGTGTTCGA GGCCCAGGCC
CGCGACGGCC AGGACTATGC CATCCTGCGC CCGACCGTGG TGGCGGGCCG CAAATGCCCC
TTCGTGGAGC AGATGATCAT CTCGATCCTG CAGCAACCCG AGACCATCGA GGTCCAGCGC
CGGATGTGGG ACACGATGCA ATGGGCCCAC GGCTCCGACA TCGCGGCGGC GGCGTTGCTG
GTCGGCGAGC ATCCCGAGGC CGCGAACCAG TGCTTCCTCG TGGCCGGCAG CGAGCCGATC
ACGATCTACG ACGTGCAGGC CCATATCTGG GACATCATGA ATGTCGGCAA GAGCGACAAT
CCTCACCGGG ACATCGCCGA GCGCAACAAT CTCGGCCTGT GCAAGTTCGA GCCGCGCAAG
CTGCGCGCGC TTGGCTGGGC ACCCCGGGTG GACGTGAAAT CCTGCATTAC CGAGGTGCTC
GGCCGGTTGG AGTTCTACTC CTCGGCCAGC ATCAAGCTGC CGGCGCACAT GGTCGGCGAC
TGA
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| Protein sequence | MRILVTGPTG AIGQYVLEGL MQTDHDVRVL SLPDSLHRIN FRDRIEIVMG ELSDDISLAE
AVEGVDIIYH CALVGPPPAM SADHMMHVNA EGTRNLLRHA AGRVQRVVLC SSNNVYTPHR
APAMWPLLDD ALREAHGNPQ QVALGESLIA AEDAVFEAQA RDGQDYAILR PTVVAGRKCP
FVEQMIISIL QQPETIEVQR RMWDTMQWAH GSDIAAAALL VGEHPEAANQ CFLVAGSEPI
TIYDVQAHIW DIMNVGKSDN PHRDIAERNN LGLCKFEPRK LRALGWAPRV DVKSCITEVL
GRLEFYSSAS IKLPAHMVGD
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