Gene Dshi_1951 details

Gene Information

• Locus tag: Dshi_1951
• ID: 5712945
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dinoroseobacter shibae DFL 12
• Kingdom: Bacteria
• Replicon accession: NC_009952
• Strand: -
• Start bp: 2041913
• End bp: 2045206
• Gene Length: 3294 bp
• Protein Length: 1097 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 641267876
• Product: hypothetical protein
• Protein accession: YP_001533293
• Protein GI: 159044499
• COG category: [V] Defense mechanisms
• COG ID: [COG1566] Multidrug resistance efflux pump

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00270024
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 16
• Fosmid unclonability p-value: 0.000836755
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGCCCCCAA GCCATGCAGC GTTGGTGCCC GATGGCACGC CGCGCAAGCG TTACAGACTA 
AGCCCAGATG CAAAGCTCAC CCGCGCGCCT GTCGAGGAGG GCAAGCCGCG CCACGGGTTT 
TACAAGGACG CGAAATCCGG GCGGCTGTTT CGTCTCGGGG CGGAGGAGTT CTTCCTGCTG 
ACCCAGCTGG AGCGGGGCGA GGATTTCACC GCCGCCGGCA AGGCGTTCCG CGCCCGGTTC 
GGCACCGGCG TGCGCGAAGC CACGATCGCG GGGTTTGCGG CACAGATGGT CGCCGCCGGC 
GTGCTGGTGG AGGCAACCGG CACCGACCCC CGCGCCGAGG CCCCGTCCCC GAGGCCCGAC 
CGGGCCGCGC CGCTGCGTCC CCCCATCGAC CAAAGCCGGG CGCATAACGC CGACCGGGAC 
GAGTTCGACG CGTTCGAGGA CCTGCTGCCG GAGGCGGGCT CTGCCTTCGA TGGCCCTCCC 
GAGGACGATA TCGACGGGCT CGAAGAGCTG ATCTTTTCCG ACGCGCCGGA CGACCGTGCC 
GATCCTCCCA AGCCCGCGCC GGAGCCCGCC TCCGGGGAGA CGCCCGCCGC GCCCAGTTTC 
CGGGCGGCCG CCGCCGCCGC GCGCGTCGCC AAGGGGGCCG CAGGCACCGC GCGGCCCGAC 
CCGGACCAAC CCGCCGAAAG CCCCCCCAAA GACTCGCAGG CGCCTTCGAC GGACAAGGCC 
GCGTCCCCCG CCGACACCCC CGCGCCCGAC GGCAAGGCCG ACACATCCGC GACCCCCGCC 
CCGGGCCCCG GTCCGCAACC GCGCCGAAAG CAGACCTTCT TTCGCAAGAC CGGCCTGCAT 
GACGGGGTGG CCCGCAAACC CGCCAAGAAA GACGACACCC GGGACGCCGC CGACACCGCC 
CCGCAAGACC CGCCCGACGC ACCCGCCGAT CGCGCCGCCC CGACCGCACC CGGCCCGGAG 
CCCGCCAGGG CCCGCGCCGA GGCGACGGCA CCCCGGGCGG CCTTCGGCAC CGGGCCCGAC 
CCGAAGGACA AGGCCCCCGG CACCGGCATC ATCAAGCTCT TCGCGCCCAA CGGGCTTTTC 
GCGGTGCTCA ACGCGCTCTT CGGCTGGATG GCCTGGTTCA AATGGCTGCT CTGGCCGCTG 
ACGCTCTTTG CGTTCATGGC CGTCTTCACC CGGCTGTCGG AATACGGCAC CAGCATCTCC 
AACGCCCGCG GGGCGATCGA CCTGGTCTGG CGGCTGGTGA TCTCGACCCT GACGGTCAAT 
TTCTGCGCGG CCTTCTTCAC CGGCTGGGCG ATCCACCGCC AGGGGGCCAA GGTGCCCGCC 
TTCGGCATCC GCATGATCCT CTATGTCATC CCGCGCTTCG CCGTGGACGA GCAGGCGGTC 
TACAAGCTGC CGCGCGAAGC CAAGCTGGCG GTCTATTCCA CCACCATGCG CGCGCGGCTC 
TTCCTGTTCG CGGCAGGCAC CACCCTGTGG GCCTTCACGC GCCACTCCCA GACCGTGATC 
CCCGACATGA CCCTGCTGGT GTCGCAGATC GCGCTCCTGA CCCTGGTGTT CACGGCCTTC 
CCGCTGATGT CCGGAGACGG GTACAAGTGG CTCACGACCT TCTTCGGCCA GGAGATGCTG 
AAGCAGCGCG CCCATGCCTG GCTGTTCAGG AACAACCAGA GCAAGATGGG CTTCACCTAT 
CCCGAGCCGA GCGCGGGCGA GAAACGCGCC TTCATCTTCT ACACGGTCGG CTCGCTTCTG 
TTCATGGGGC TGGTGCTGTC GTTCCTCTTC GTGTGGGTGT CGGGCGCGCT GGTGGGCCGC 
TATGGCGGCT CGGGCGCGGC GCTCTTCTTC TTCCTGCTCG TGGCGATCGG CTTCTGGGTG 
ATGTCGATGA AATCGAAGCA GCACAAAGCG ATGGAGCATG GGGTCAAGAC CATGATGGCC 
GAGAAGCAGG CCGCGCGCGC AGCCCAGGGC GGCGCGGGCG GCTTCGGCGG GGCCGAGGGC 
TTTGCCGCGC AGGGCGCGGG CGGCGGTTTC ACACGCGGCG CCGGCGCCGG CGGCGGCTTC 
GGCGGCGGGC CGGGCGGCTT CGCTGCGGGC GGCGCAGGCG GCTTTGCCGC GCCGGCCGGG 
AGCAGGGCCG GGGCGGGCGT CGCGGCCGCG CCCGGTCAAA GCCGGGCCAT GGTGCCGGTG 
CCGCAAACCG GCCGGGCCCT GGCGCTCGGC CAGTCGCGCG ACCTGACCAG GCTCGGCTCC 
CGGCCCCTGC CGGGCGTCCT TGCCGAGCCT GCGCCGAAAT CGCGCCGCTG GGCCTGGATC 
CGGCGGCTCA CGCTGTTGGC GGCGGCGGGC GCGCTGATCT ACGCGGCCTT CCAGCCCTAT 
GCGTTCGAGG TGGGGGGCGA TTTCACCATC CTGCCGGACA CCCGGATCGA GGTGGGCGCG 
CGCGTGGCGG GCGAGCTGGT CGAGATCCAT ATCGACGAGG GTGACGTGGT CAGCGAGGGC 
GACCTGCTGG CGCGCATGTC CGACTGGGAA CCGCGGCTCG AGGTGGATGT GCGCGTGGCC 
AAGCTCGCCC AGGCAGAGGC CCGGCTGCAG GACCTGCTCG ACGGCGCCAC CGCCGAAGAG 
ATCGCCATCG CCGAGGAAAA CGTCGCCCGG GCCGAGGCGG AGCTGCCCTT CCTGCGCTCC 
CAGGCGGAGC GCGCGGATGA GCTTTTTGCC CGCAACGCGA TCTCCCAGGT GGAATACGAA 
CGCCTGCGGC TGGAATACCA GACCGGCCAG ATCGACCTGC GCTCGGCCCA GGCGGTGCTG 
GCGGATGTGA CCGCGCCGCC CTCGGCGCCG GACGTGGCCG TGGCCGAGGC GGAGATCGAG 
CGGCTCAATG CCGAGCTGGC TTTCTACCGC GACCAGCTCG ACAAGGTCGA GCTGCGCGCC 
ACCGCCGACG GCCGGATCGT GACCGAGAAC GTGCAGCTTC TGCGCGGGAA ATACCTCCAG 
GTGGGCGAGC TGTTCGTCGA GATCGAGGAC CACGAGATCG CCCGGGCGGA GGTGCTGGTG 
TCGGAAACCG ATATCGGGCT GGTCGAGGTC AACGACCGCG TCCGGCTCAA GGCCTGGGCC 
ATCCCCGACG AGGAACGGAT CGGCACCGTG GTCTCCATCG CGCCCTCGGC GGAGGCCGAG 
GAGTTCGGCC GCGTGGTCCG CGTCAAGACC CAGTTTCCCA ACGAAGAGGG CTTCTTCCGT 
CCCGAGATGA CCGGGTTCGC CAAGATCGAA GGGGCCGAGA TGAAGACCTG GGAGGCGTTC 
TCCCGCCTGA TCGTGCGGTT CTTCCAGATC GAGGTCTGGG GCTGGATCCC CTGA 

 

Protein sequence

MPPSHAALVP DGTPRKRYRL SPDAKLTRAP VEEGKPRHGF YKDAKSGRLF RLGAEEFFLL 
TQLERGEDFT AAGKAFRARF GTGVREATIA GFAAQMVAAG VLVEATGTDP RAEAPSPRPD 
RAAPLRPPID QSRAHNADRD EFDAFEDLLP EAGSAFDGPP EDDIDGLEEL IFSDAPDDRA 
DPPKPAPEPA SGETPAAPSF RAAAAAARVA KGAAGTARPD PDQPAESPPK DSQAPSTDKA 
ASPADTPAPD GKADTSATPA PGPGPQPRRK QTFFRKTGLH DGVARKPAKK DDTRDAADTA 
PQDPPDAPAD RAAPTAPGPE PARARAEATA PRAAFGTGPD PKDKAPGTGI IKLFAPNGLF 
AVLNALFGWM AWFKWLLWPL TLFAFMAVFT RLSEYGTSIS NARGAIDLVW RLVISTLTVN 
FCAAFFTGWA IHRQGAKVPA FGIRMILYVI PRFAVDEQAV YKLPREAKLA VYSTTMRARL 
FLFAAGTTLW AFTRHSQTVI PDMTLLVSQI ALLTLVFTAF PLMSGDGYKW LTTFFGQEML 
KQRAHAWLFR NNQSKMGFTY PEPSAGEKRA FIFYTVGSLL FMGLVLSFLF VWVSGALVGR 
YGGSGAALFF FLLVAIGFWV MSMKSKQHKA MEHGVKTMMA EKQAARAAQG GAGGFGGAEG 
FAAQGAGGGF TRGAGAGGGF GGGPGGFAAG GAGGFAAPAG SRAGAGVAAA PGQSRAMVPV 
PQTGRALALG QSRDLTRLGS RPLPGVLAEP APKSRRWAWI RRLTLLAAAG ALIYAAFQPY 
AFEVGGDFTI LPDTRIEVGA RVAGELVEIH IDEGDVVSEG DLLARMSDWE PRLEVDVRVA 
KLAQAEARLQ DLLDGATAEE IAIAEENVAR AEAELPFLRS QAERADELFA RNAISQVEYE 
RLRLEYQTGQ IDLRSAQAVL ADVTAPPSAP DVAVAEAEIE RLNAELAFYR DQLDKVELRA 
TADGRIVTEN VQLLRGKYLQ VGELFVEIED HEIARAEVLV SETDIGLVEV NDRVRLKAWA 
IPDEERIGTV VSIAPSAEAE EFGRVVRVKT QFPNEEGFFR PEMTGFAKIE GAEMKTWEAF 
SRLIVRFFQI EVWGWIP