Gene Dshi_1946 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1946 
Symbol 
ID5712940 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp2035685 
End bp2036734 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content71% 
IMG OID641267871 
Productpermease component of branched-chain amino acid transport system 
Protein accessionYP_001533288 
Protein GI159044494 
COG category[R] General function prediction only 
COG ID[COG4603] ABC-type uncharacterized transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.251355 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.000358209 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGGCTTG AAGCCATCCC GGCCCCGACC CTGACCCGCA CCCTCGGCCT GCCCGCCGTC 
GCGCTCACCC TGACCGTGAT CGCGGCCTCG GGCCTGGCGC TGGTGGCAGG CGGCGATCCC
TTCGCGGTGC TGGGGCTGAT CGTGCAGGGC GCCGTCGGCT CCAAATTCGC CCTGCTGGAG
ACCCTCAACC GCGCCACGCC GCTGATCTTC ACCGGCCTCG CGGTCGCCGT CGCCTTCCGC
GCCAAGCTGT GGAACATCGG CGCGGAGGCG CAGCTTTACG GCGGCGCGGT CATCACTGTG
GTCCTGGGCA CGGGCTTTCT GCCCTGGCCC GCGGGCGTCC TGCTGCCGGT GCTGGTGATC
GCGTCGATGC TGACCGGCGC GCTCCTGCTG CTCGGCCCCG CGTATCTCAA AACCCGGCTC
GGGGTGGACG AGGTGGTCAC CACGCTACTG CTGAACTTCA TCGCGCTTCT CTTCGTCTCC
ATGCTGCTCG AAGGCCCGCT GAAGGACCCC ATGGGCATGG GCTGGCCCAA GTCCGAGCGC
CTGATCCCCG AGGCCCGGCT GCCGCGCCTC GTGGACGGGC TGCGCCTGCA CTGGGGCTTT
GCGCTGGCCC TGATCGCCGC CGCCGCCGTC TGGGTGATCC AGACCCGCAC CACGCTGGGC
TACGAGATGC GCGCCGTGGG TCAGAACCCG GACGCCGCGC GTTTCGCGGG CATCCCGGTG
GGCGCGGTGA TCCTGAAAAC CGCCTTCCTG TCGGGCGGGC TCGCGGCGCT GGCGGGGTTT
TCCGAGGTGG CGGGGCTCAA GGGCTCGCTC ACCCTCGATC TCAGCCCGGG CTTTGGCTAC
ACCGGCATCA TCGTGGCGAT GCTCGCCCTC CTGAACCCGC TCGGCGTGGT GGTCTCGGCG
CTCTTCGTGG CGGGCGTCTT CGTCGGCGCC GACAGCATGA GCCGGGCGGC CGACGTGCCC
ACCTATATCG CCGACATCCT GCTCGCACTC GCGCTCCTGT CCATGGTCCT CGCCATCCTG
CTGACACGCT TCCGGGTGGT GCGCGACTGA
 
Protein sequence
MRLEAIPAPT LTRTLGLPAV ALTLTVIAAS GLALVAGGDP FAVLGLIVQG AVGSKFALLE 
TLNRATPLIF TGLAVAVAFR AKLWNIGAEA QLYGGAVITV VLGTGFLPWP AGVLLPVLVI
ASMLTGALLL LGPAYLKTRL GVDEVVTTLL LNFIALLFVS MLLEGPLKDP MGMGWPKSER
LIPEARLPRL VDGLRLHWGF ALALIAAAAV WVIQTRTTLG YEMRAVGQNP DAARFAGIPV
GAVILKTAFL SGGLAALAGF SEVAGLKGSL TLDLSPGFGY TGIIVAMLAL LNPLGVVVSA
LFVAGVFVGA DSMSRAADVP TYIADILLAL ALLSMVLAIL LTRFRVVRD