Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1946 |
Symbol | |
ID | 5712940 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 2035685 |
End bp | 2036734 |
Gene Length | 1050 bp |
Protein Length | 349 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641267871 |
Product | permease component of branched-chain amino acid transport system |
Protein accession | YP_001533288 |
Protein GI | 159044494 |
COG category | [R] General function prediction only |
COG ID | [COG4603] ABC-type uncharacterized transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.251355 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.000358209 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCGGCTTG AAGCCATCCC GGCCCCGACC CTGACCCGCA CCCTCGGCCT GCCCGCCGTC GCGCTCACCC TGACCGTGAT CGCGGCCTCG GGCCTGGCGC TGGTGGCAGG CGGCGATCCC TTCGCGGTGC TGGGGCTGAT CGTGCAGGGC GCCGTCGGCT CCAAATTCGC CCTGCTGGAG ACCCTCAACC GCGCCACGCC GCTGATCTTC ACCGGCCTCG CGGTCGCCGT CGCCTTCCGC GCCAAGCTGT GGAACATCGG CGCGGAGGCG CAGCTTTACG GCGGCGCGGT CATCACTGTG GTCCTGGGCA CGGGCTTTCT GCCCTGGCCC GCGGGCGTCC TGCTGCCGGT GCTGGTGATC GCGTCGATGC TGACCGGCGC GCTCCTGCTG CTCGGCCCCG CGTATCTCAA AACCCGGCTC GGGGTGGACG AGGTGGTCAC CACGCTACTG CTGAACTTCA TCGCGCTTCT CTTCGTCTCC ATGCTGCTCG AAGGCCCGCT GAAGGACCCC ATGGGCATGG GCTGGCCCAA GTCCGAGCGC CTGATCCCCG AGGCCCGGCT GCCGCGCCTC GTGGACGGGC TGCGCCTGCA CTGGGGCTTT GCGCTGGCCC TGATCGCCGC CGCCGCCGTC TGGGTGATCC AGACCCGCAC CACGCTGGGC TACGAGATGC GCGCCGTGGG TCAGAACCCG GACGCCGCGC GTTTCGCGGG CATCCCGGTG GGCGCGGTGA TCCTGAAAAC CGCCTTCCTG TCGGGCGGGC TCGCGGCGCT GGCGGGGTTT TCCGAGGTGG CGGGGCTCAA GGGCTCGCTC ACCCTCGATC TCAGCCCGGG CTTTGGCTAC ACCGGCATCA TCGTGGCGAT GCTCGCCCTC CTGAACCCGC TCGGCGTGGT GGTCTCGGCG CTCTTCGTGG CGGGCGTCTT CGTCGGCGCC GACAGCATGA GCCGGGCGGC CGACGTGCCC ACCTATATCG CCGACATCCT GCTCGCACTC GCGCTCCTGT CCATGGTCCT CGCCATCCTG CTGACACGCT TCCGGGTGGT GCGCGACTGA
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Protein sequence | MRLEAIPAPT LTRTLGLPAV ALTLTVIAAS GLALVAGGDP FAVLGLIVQG AVGSKFALLE TLNRATPLIF TGLAVAVAFR AKLWNIGAEA QLYGGAVITV VLGTGFLPWP AGVLLPVLVI ASMLTGALLL LGPAYLKTRL GVDEVVTTLL LNFIALLFVS MLLEGPLKDP MGMGWPKSER LIPEARLPRL VDGLRLHWGF ALALIAAAAV WVIQTRTTLG YEMRAVGQNP DAARFAGIPV GAVILKTAFL SGGLAALAGF SEVAGLKGSL TLDLSPGFGY TGIIVAMLAL LNPLGVVVSA LFVAGVFVGA DSMSRAADVP TYIADILLAL ALLSMVLAIL LTRFRVVRD
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