| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1937 |
|---|
| Symbol | |
|---|
| ID | 5712931 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2025991 |
|---|
| End bp | 2027403 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641267862 |
|---|
| Product | YcjX-like family protein |
|---|
| Protein accession | YP_001533279 |
|---|
| Protein GI | 159044485 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3106] Predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.000113085 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGGTTTTCT CCACACTGAC CGACACGATC GAGCGCGGGG TCACAGGCCT GGGCAGCGCG
GTCTCCGAGA CGTTTTTCGA GCCGGTGATC CGGCTCGGCG TGACGGGCCT GAGCCGGTCG
GGCAAGACCG TGTTCATCAC CTCGCTGGTG GCCAATTTGC TGGACCGGGG CCGGATGCCG
CAATTCCAGG CGGCCGCCAC CGGCGCGCTG CAATCCGCCT ATCTGCAGCC CCAGCCCGAC
GACACGGTGC CGCGGTTCGA TTTCGAGACC TCGCTGGCGC AGATGACCGG GCGCAACCCC
ACCTGGCCCG AAAGCACCCG CGCGATCTCG GAGTTGCGAG TCTCCCTGCG GGTGCAGCCT
CAGGGGTTTC TGGGCGCGCT GTCGCGGCCC CGGACGGTGC ATCTCGACAT CGTGGACTAC
CCCGGCGAAT GGCTTCTCGA CCTTGCCCTG TTGGACAAAA CCTATGCCGA ATGGTCGGCG
GACATACTTG TGCGGCTACG GACCCGGCCC GGGGCGGAGG CGTTTCTGGC CGCGCTTGAG
GCCGCCGATC CCGCCGCCAA ACTGGCCGAG CCGGACGCGC AGGCGCTGGC GCGGGCCTAC
ACCCAAGCGC TCCACGCCGC GCGGGCGGCG GGGTATTCGG ACTGCACCCC GGGGCGCTTC
ATCCTGCCCG GGGAGCTGGA GGGATCGCCG GTGCTGACCT TCGCGCCCTT GCCGCCGGGG
CCATACCCGC GCGGCGCGCT CGGGCGGGAG TTCGAGCGGC GGTTCGAGGC CTACAAGCGC
GAGGTGGCCA AGCCCTTCTT TCGCGACCAT TTTTCCCGGA TCGATCGGCA GATCGTATTG
ATCGACGCGC TTGGCGCGCT CCATGCGGGG CCCGGCGCGG TGGAAGACCT GCGCGCCACG
ATGCAGGACA TCCTGAGCGC GTTCCGTCCC GGCGCGAACA GCTGGCTGAG TGCCGTTCTG
GGCCGACGGG TGGAGCGCAT CCTGTTTGCC GCCACCAAGG CCGACCACCT GCATCACAGC
CAGCACCCGC AACTGACCGC GATCATGGAG GCGCTGGTGC GCGATGCGCG CCGCCGGGCG
GATTTCGCCG GGGCCGAGAC CGGGGCCATG TCCATCGCCG CCCTGCGCAC CACGGTGGAG
GAGACCCGCG TCCATGAGGG CCGGAGCCTC GACCTGGTGC GGGGCACGCT GCTGGAGACG
GGCAAGCAGG CGGCGTTCTT CGCCGGCGAG TTGCCCAAGG ACCCCAACCA GGTGCTGGGG
CCCGCGCGGG ACGGAGAGAC CAGCTGGCTC GACGGGGACT ACGCGGCCAT GCGGTTCGCG
CCCGCCAGGA TCAGCCTCGC GCCGGGGGAG GGGCCGCCCC ATATCCGGCT CGACCGGGCG
GCGGAGTTTC TGTTGGGGGA CCGTTTGAGA TGA
|
|---|
| Protein sequence | MVFSTLTDTI ERGVTGLGSA VSETFFEPVI RLGVTGLSRS GKTVFITSLV ANLLDRGRMP
QFQAAATGAL QSAYLQPQPD DTVPRFDFET SLAQMTGRNP TWPESTRAIS ELRVSLRVQP
QGFLGALSRP RTVHLDIVDY PGEWLLDLAL LDKTYAEWSA DILVRLRTRP GAEAFLAALE
AADPAAKLAE PDAQALARAY TQALHAARAA GYSDCTPGRF ILPGELEGSP VLTFAPLPPG
PYPRGALGRE FERRFEAYKR EVAKPFFRDH FSRIDRQIVL IDALGALHAG PGAVEDLRAT
MQDILSAFRP GANSWLSAVL GRRVERILFA ATKADHLHHS QHPQLTAIME ALVRDARRRA
DFAGAETGAM SIAALRTTVE ETRVHEGRSL DLVRGTLLET GKQAAFFAGE LPKDPNQVLG
PARDGETSWL DGDYAAMRFA PARISLAPGE GPPHIRLDRA AEFLLGDRLR
|
|---|
| |