| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1936 |
|---|
| Symbol | |
|---|
| ID | 5712930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2024978 |
|---|
| End bp | 2025994 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641267861 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001533278 |
|---|
| Protein GI | 159044484 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3768] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR01620] conserved hypothetical protein, TIGR01620 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.394399 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0000381531 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA CACGCAAATC GTCGGTGGTG ATCGACCTCG AAGACGCCCC GCAAGGGGCG
GAGGAGAGCC CGGCGACCGC CCCGCCGGTG CCCGACCTGC CCGGTGTGCT GCCCCAGGGC
CAGGCGATGC AGACCGCCGC CCGGCTGGCG GCGCGGCGGC CCTCGCGGCT GGTGCAACTG
TTTTTGTCCT CGGCCTTGGC GCTGTTGCTG TTCATGGCCG GGGTGGCGGC GACCGATTTC
GTCACCGGCC TGCTGAGCGC GACCCCCATT CTGGGGGCGG TGGCGGGGGG CTTGCTGACG
CTCGTGCTGC TCAGCGCGCT GCTCATCGCT CTGCGGGAAT GGCTGGCCTA CAGGCGCCTG
GGCAAGCTCG ACGCGATCCG GTTGCAGGCC GATGCGGCCC TGTCGGGCGG CAGCCTGCCC
GAGGCCAGGG CGGTGGCGGG GCGCATCGCC GCGCTTTACG CGGACCGGCC GGAATTGCAG
GCGCCGCGCG CCACGCTGGA CCGGGCGGTC AAGGACCAGT TCGAGCCGGA CGCGGTCTTT
GCCCTGCTGG AGCGCGAATT GCTGGCCCCG CTGGACCTGC GCGCGGAGGC CGAGATCGCC
GCCGCCACCC GCCAGGTCGC CACGGTCACG GCGCTGGTGC CGCTGGCGTT GGCCGATGTG
GTGGCGGCGC TGACCTCGAA CCTGCGGATG ATCCGGCGGA TCGCCGAGAT CTATGGCGGG
CGCGCGGGCA CGCTGGGCAG CTGGCGGCTG ACGCGCTCGG TGCTGACCCA TCTGGTGGCC
ACGGGGGCGG TGGCGGTGGG CGACGACCTG ATCGGGTCCG TCGCCGGGGG CAGCGTTCTG
TCGAAAGTGT CCCGCCGGTT CGGCGAGGGC GTGGTCAATG GCGCGCTGAC CGCCCGGGTC
GGGGTCGCGG CGCTGGAAGT GTGCCGCCCG CTGCCCTTCG GGCCCAAACG CAAACCGTCG
GTCACGCGGC TGGTGAAACA GGCGTTGGGC GGTCTATTTT CCTCGAAAGA CACATAA
|
|---|
| Protein sequence | MTDTRKSSVV IDLEDAPQGA EESPATAPPV PDLPGVLPQG QAMQTAARLA ARRPSRLVQL
FLSSALALLL FMAGVAATDF VTGLLSATPI LGAVAGGLLT LVLLSALLIA LREWLAYRRL
GKLDAIRLQA DAALSGGSLP EARAVAGRIA ALYADRPELQ APRATLDRAV KDQFEPDAVF
ALLERELLAP LDLRAEAEIA AATRQVATVT ALVPLALADV VAALTSNLRM IRRIAEIYGG
RAGTLGSWRL TRSVLTHLVA TGAVAVGDDL IGSVAGGSVL SKVSRRFGEG VVNGALTARV
GVAALEVCRP LPFGPKRKPS VTRLVKQALG GLFSSKDT
|
|---|
| |