| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1887 |
|---|
| Symbol | |
|---|
| ID | 5712879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1964382 |
|---|
| End bp | 1965539 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641267811 |
|---|
| Product | putative ribonuclease D |
|---|
| Protein accession | YP_001533230 |
|---|
| Protein GI | 159044436 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0349] Ribonuclease D |
|---|
| TIGRFAM ID | [TIGR01388] ribonuclease D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0137487 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.150443 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACAC TGACCGATAC CGCCGCACTG GCCGACTTCT GCGCCCGTGC GGCCGAGCAT
GACTACGTCA CAGTCGATAC CGAGTTTCTG CGCGAGCGCA CCTATTACGC CAAGCTCTGC
CTCGTCCAGC TTGCCTATCC GGGCGAGGGG GAAGAGACCG CCGTGCTGGT CGACCCGCTG
GCCGAGGGCA TGTCCCTCGC GCCGATGCTG GATCTCTTCC GCAACCCCGA CGTGGTCAAG
GTGTTCCACG CGGCCCGGCA GGACCTCGAG ATCTTCTTCG TCGAGCACGG GGTCTTTCCC
GAGCCGCTTT TCGACACCCA GGTCGCGGCC ATGGTCTGCG GCTTCGGCGA GCAAGTCGGC
TACGAGACGC TGGTGCGCAA GATCGCCCGC GAGAGCCTCG ACAAGACCTC GCGCTTCACC
GACTGGTCCC ACCGGCCCCT CTCCAAGGCG CAGAAGAAAT ACGCCCTGGC CGATGTCACC
CATCTGCGCG TGATCTACGA ATACCTCGCC GCCGCGATCG ACAAGACCGG CCGCCGCGCC
TGGGTCGAGG AGGAGCTACA GGGCCTGCTC GATCCCGAGA TCTACGTGGT CGACCCGGAC
GAGGCCTGGC GCCGGGTGAA AACCCGCACC AATTCGGGCA AGTTCCTGTC GACCGTCCGG
GCGCTCGCGC GGTTCCGCGA AACCTTCGCC CAGGGGCGCA ACATCCCCCG CAGCCGGGTG
TTCAAGGACG ATGCGCTGCT GGAACTGGCC TCCACCAAGC CGCAATCGGT GCAGGATCTG
GGCCGCTCGC GCCTGCTGCT GCGCGAGGCC CGGCGCGGCG AGATCGCCGA GGGCATCCTC
GCCGCCGTGG CCGAAGGCCA GGCGACCGAG CCCGAGGACT ACCCGGAGAT CGACCGCAGC
CGCGAAAAAC TGCAGGTCAA CACCGCGCTT GCGGACCTGC TCCGGGTGCT GCTCAAGGCC
AAGTCCGAAG ACGCCGGCGT CGCCTCGCGG ATGATCGCCT CTGCCGCCGA TCTCGACGCC
ATGGCGGCAG GGGAAATGAC CGTCCAGGCG CTGAAGGGCT GGCGCGCCCA GGTCTTCGGC
CAGGATGCCC TGCGGCTCTG CGACGGCAAG ATCGCGCTGA CCACCCAAGG CAGCAAGGTC
CGCATCGTCG AACTCTGA
|
|---|
| Protein sequence | MDTLTDTAAL ADFCARAAEH DYVTVDTEFL RERTYYAKLC LVQLAYPGEG EETAVLVDPL
AEGMSLAPML DLFRNPDVVK VFHAARQDLE IFFVEHGVFP EPLFDTQVAA MVCGFGEQVG
YETLVRKIAR ESLDKTSRFT DWSHRPLSKA QKKYALADVT HLRVIYEYLA AAIDKTGRRA
WVEEELQGLL DPEIYVVDPD EAWRRVKTRT NSGKFLSTVR ALARFRETFA QGRNIPRSRV
FKDDALLELA STKPQSVQDL GRSRLLLREA RRGEIAEGIL AAVAEGQATE PEDYPEIDRS
REKLQVNTAL ADLLRVLLKA KSEDAGVASR MIASAADLDA MAAGEMTVQA LKGWRAQVFG
QDALRLCDGK IALTTQGSKV RIVEL
|
|---|
| |