Gene Dshi_1874 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1874 
Symbol 
ID5712866 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1953173 
End bp1953769 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content74% 
IMG OID641267798 
Productputative regulatory protein 
Protein accessionYP_001533217 
Protein GI159044423 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.885441 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.710734 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCTCCC CACATCCGCC GGGCCGCCCC CGGGAATTCG ACCCCGACGA GATGCTCGAC 
CGGATCCTGG GCCTGTTCTG GGAAAACGGC TACGAGGGCA CCGGGCTGAG CGACATCACC
CGCGCCACCG GGCTGGGCAA GGCGAGCCTC TATGCCGCCT TCGGCAACAA GCACCAGATC
TATCTCCGGG CGCTCGCCCG CTACGAGCAG ACGGTGGTGT CTCCGGGCGC CGCCGCCCTG
CGCGCCCCCG ACACCCCGCC CCGGGATCGG ATCGCGAGGT TCCTGTCCGC TCCGGTGGAG
GCGGTCGTGC AGGCGGGCGA TCACCGAGGC TGTTTTTTGT GCAACGCGGT CTCCGACCGG
GCGGCGCTCG ATCCCGAAAC CGACCGGATG GTGCAGCGCG GCTACGGCAT CCTGCGGCGC
GCGCTGGCCG CGACCCTGCG CGAGGCCGAC CCGGACACGC CGGACCCGGC GCTCGCCGCC
CGCGCCGAGA TGCTGCTGTC GCTCTATGCC GGGCTGCGCG TGCGGGCGCG GGCCGGGGAC
GGGGCGGCGG TTCTCGCCGC CAGCCGCGAC GCGGCACTGG CCCTCCTGTG TCCGTGA
 
Protein sequence
MASPHPPGRP REFDPDEMLD RILGLFWENG YEGTGLSDIT RATGLGKASL YAAFGNKHQI 
YLRALARYEQ TVVSPGAAAL RAPDTPPRDR IARFLSAPVE AVVQAGDHRG CFLCNAVSDR
AALDPETDRM VQRGYGILRR ALAATLREAD PDTPDPALAA RAEMLLSLYA GLRVRARAGD
GAAVLAASRD AALALLCP