| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1854 |
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| Symbol | ccmB |
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| ID | 5712846 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1934384 |
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| End bp | 1935040 |
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| Gene Length | 657 bp |
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| Protein Length | 218 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641267778 |
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| Product | heme exporter protein B |
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| Protein accession | YP_001533197 |
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| Protein GI | 159044403 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG2386] ABC-type transport system involved in cytochrome c biogenesis, permease component |
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| TIGRFAM ID | [TIGR01190] heme exporter protein CcmB |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.116967 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.847567 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGAAGGCGC TGTTGCTGCG GGACCTGGCC CTGGCGGTCA AGGCCGGGGG CGGCTTCGGG
CTGAGCCTGG CGTTTTTCCT GATCGTGACG GTGCTGATCC CGTTCGGCGT GGGGCCGGAT
ACCGGCATCC TGCGGGAGGT GGCGAGCGGG GTGCTTTGGG TGGGGGCGCT GCTGGCGTGT
CTGTTGTCGC TCGACCGGAT TTTCCAGCTG GATTACGAGG ACGGGTCGAT GGACCTGCTG
GTCACGGCGC CCCTGCCGCT GGAGGGGTTG GTGGCGGTCA AGGCGTTTGC CCATTGGCTG
ACCACGGGGC TGCCGCTGAC GCTGCTGGCG CCGGTGCTGG CGGTGCTGCT GAACCTCGAC
CCGGCGGGGT TTCCGTGGCT GGTGGTCTCG CTCGCGCTCG GCACCCCGGC GCTGAGCATG
ATCGGCACCT TCGGCGCGGC CCTGACCGTG GGGCTGAAGC GGGGCGGGCT GCTGCTGTCG
CTGCTGGTGC TGCCGCTCTA TGTGCCGACG CTGATCTTCG GGGCCGAAAC CGTGCGGCGG
GCGGTGGACG GGTTCGATAT CGTCACGCCG CTCTTGATGC TGTCGGGGAT CACCATGGGC
GCCATCGCGC TGCTGCCTTT CGCGGCGGCT GCGGCAATCC GTATCAACCT GCGCTAG
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| Protein sequence | MKALLLRDLA LAVKAGGGFG LSLAFFLIVT VLIPFGVGPD TGILREVASG VLWVGALLAC
LLSLDRIFQL DYEDGSMDLL VTAPLPLEGL VAVKAFAHWL TTGLPLTLLA PVLAVLLNLD
PAGFPWLVVS LALGTPALSM IGTFGAALTV GLKRGGLLLS LLVLPLYVPT LIFGAETVRR
AVDGFDIVTP LLMLSGITMG AIALLPFAAA AAIRINLR
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