| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1834 |
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| Symbol | |
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| ID | 5712825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1913539 |
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| End bp | 1914555 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641267757 |
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| Product | putative sialic acid-binding periplasmic protein |
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| Protein accession | YP_001533177 |
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| Protein GI | 159044383 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.557031 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATTTC TTTCCCGGAT GACGTCCAGT GCGGCAATTG CACTGACCGC GACCATCATG
AGCATGGGCG TGGCCGATGC AAAGAACTTC AAGATCGCCG TCGGTGACAG CGGCGGCAGC
AGCCAGGAGG CCACCGGTCT CGCCTTCGTC GAAGCCCTCG AAGAACTTTC GGGCGGTGAG
CACACCGGAA CCCTGTTCCT GAACGGACAG CTCGGCTCCG AGCAGGACAC CGTCAACGAG
GCCGCCATCG GCACGCTCGA CATGTCGATC CTGGCCATCA ACAACGTCAC GCCCTTCTCG
CCCACCGTGG GCGTGTTCTC GCTGCCCTAT GTCATCCTCA GCCTCGAAGA TGCCGAGAAG
CTGACCCAGG GTCCGATCGG CGCAGAGCTG ACCGAGAACA CCATCAACGA CGCAGGCGTG
CGCATCATTG CCTGGACCTA CACCGGCTTC CGGCGCCTGA CCAACTCCAA GCAGCCGGTC
ACCTCGGTCG CCGACCTGCA GGGGTTGGTG ATCCGCGTTC CCAAGAACGA GATCATGATC
GACACCTACA AGGCCTGGGG CATCAGCCCG ACGCCGATGG CATGGTCCGA GACCTTCGCC
GGCCTGCAGA CCCAGGTCGT CGATGGCCAG GACAATCCCT ACATCACCAT CAACGCGATG
AAGTTCTACG AGGTACAGAA GTACGTCACG AACCTGCGCT ACATCTTCTC GATCGAGCCG
CTGATCATCT CCGAGCAGGT GTTTCAGGAA CTCTCCGCCG AAGACCAGGA GATCGTTCTC
GAAGCCGGCA AGCGCGCCAC GGCCGCCTCG TCCCAGTTCC TCCGCGAGAA GGAAGCCGAG
ATCAAGGAAC TGCTCATCGA AAAGGGCATG GAGATCATGG ATCCGGTGAA CAACGAGGAA
GAGTTCATCA CGCTCGCGAC CGAGGCCGTC TGGCCGAAAT TCTACGACAG CATCGGCGGC
ATCGAGAAGA TGAATGCCGT CCTGGCCGAG ATCGGCCGCG ATCCCGTCAC CGAATAA
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| Protein sequence | MTFLSRMTSS AAIALTATIM SMGVADAKNF KIAVGDSGGS SQEATGLAFV EALEELSGGE
HTGTLFLNGQ LGSEQDTVNE AAIGTLDMSI LAINNVTPFS PTVGVFSLPY VILSLEDAEK
LTQGPIGAEL TENTINDAGV RIIAWTYTGF RRLTNSKQPV TSVADLQGLV IRVPKNEIMI
DTYKAWGISP TPMAWSETFA GLQTQVVDGQ DNPYITINAM KFYEVQKYVT NLRYIFSIEP
LIISEQVFQE LSAEDQEIVL EAGKRATAAS SQFLREKEAE IKELLIEKGM EIMDPVNNEE
EFITLATEAV WPKFYDSIGG IEKMNAVLAE IGRDPVTE
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