| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1832 |
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| Symbol | siaT |
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| ID | 5712823 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1911569 |
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| End bp | 1912909 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641267755 |
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| Product | sialic acid TRAP transporter permease protein |
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| Protein accession | YP_001533175 |
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| Protein GI | 159044381 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.670907 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAGCG AAATCATCCT GATCCTGTTC GGCGGGTTCC TGACGCTGTT GCTGATCGGC
GCACCGATCA CGGTCGCGCT CGGGGTCTCC ACGCTGATCT CCTTCCTCTA TCTCGGCGAG
AACCCGATCA AGTTCGTGCA GATCGCCTTC ACCTCGGTGG GCTCCTTCCC GCTGATGGCC
CTGCCGGCCT TCATCCTGGC GGGCGCCCTG ATGGAGGCAT CCGGACTGTC GCGGCGGCTG
ATCAACGTGG CCGAGAGCTT CGCGGGGCCC TTCACCGGCG GCATGTCCGC GGCAACCGTG
TTCGCCTGCC TGTTCTTCGG GGCGATCTCG GGCTCCGGGC CCGCGACGAC GGCGGCCGTC
GGCATGCTGA TGATCCCGGC GATGATCCAG CGCGGCTACG GGCGCAGCTA TTCCTCGGCC
ATCACCGCGT CGTCGGGCGG CCTGGGCATC GTGATCCCGC CCTCGATTCC GCTCATCATC
TTCGGCATCG CCGCGCTCGG CATGCCCGCG CCGCCCGAAG CGGTGGAGAA ATTCGGCACC
TTCCAGACCG TGTCGATCCC GAAACTGTTC ATCGCCGGCT TCATGCCTGC CTTCCTGATC
GCCGGCAGCC TGCTGCTGAT GAACTACATC CTGGCCAAGA AGCACGGCTA CAAGGGCTCC
GCCGAGGGCT GGTCCGCGCG CCAGATCTGG TGCGAGTTGT ATCGCGGCTT CTGGGCGCTC
ATGGCGCCGC TGGTGATCCT GGGCGGCATC TATTCGGGCT TCTTCACGCC GACCGAGGCG
GCCATCGTGG CGATCTTCTA CACGCTGGTG GTGGGCACGG TCATCTACCG CGAGTTGAGC
TGGCAGAAGC TCTTCACCGC GCTGGAGACC ACGACCTGGC TGACCGGGCG GGTGCTGCTG
ATCATGTTCA CCGCGACCGT TTTCGGGCGG CTGCTGGTGG AAAACCAGAT CCCCGCCGTG
ATCGCCAATG GCATGCTGTC GATCACCGAC AACATCTACA TCATCTGGAC GCTGGTGATC
CTGTTCCTGC TGTTTGTCGG CATGTTCATG GAAACGCTGG CCACCATCCT GATCCTGGTG
CCGGTGATGC TGCCGGTGGC CTACAGCGTC GGCATCGACC CGATCCATTT CGGTGTGGTC
ATGGTGTGCT GTCTCGGAAT CGGGTTCCAG ACCCCGCCCC TGGGGGAGAA CCTGTTCATC
GCCTCGGGCA TCTCGAACAT CTCGATCGAG CGGATCTCGG TCGCGGCACT GCCCTTCGCC
TTCATCAACA CGGTCGCGAT CTTCATCATC GCCTTCGTCC CCGAAATCAC GCTCTGGCTA
CCGCGGCTTC TCGGCTACTG A
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| Protein sequence | MESEIILILF GGFLTLLLIG APITVALGVS TLISFLYLGE NPIKFVQIAF TSVGSFPLMA
LPAFILAGAL MEASGLSRRL INVAESFAGP FTGGMSAATV FACLFFGAIS GSGPATTAAV
GMLMIPAMIQ RGYGRSYSSA ITASSGGLGI VIPPSIPLII FGIAALGMPA PPEAVEKFGT
FQTVSIPKLF IAGFMPAFLI AGSLLLMNYI LAKKHGYKGS AEGWSARQIW CELYRGFWAL
MAPLVILGGI YSGFFTPTEA AIVAIFYTLV VGTVIYRELS WQKLFTALET TTWLTGRVLL
IMFTATVFGR LLVENQIPAV IANGMLSITD NIYIIWTLVI LFLLFVGMFM ETLATILILV
PVMLPVAYSV GIDPIHFGVV MVCCLGIGFQ TPPLGENLFI ASGISNISIE RISVAALPFA
FINTVAIFII AFVPEITLWL PRLLGY
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