Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1809 |
Symbol | uvrA |
ID | 5712797 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 1883361 |
End bp | 1886222 |
Gene Length | 2862 bp |
Protein Length | 953 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641267729 |
Product | excinuclease ABC subunit A |
Protein accession | YP_001533152 |
Protein GI | 159044358 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0178] Excinuclease ATPase subunit |
TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGGAGT TGAAGAAGAT CGAGGTGCGC GGCGCGCGCG AGCACAACCT CAAATCCATC GACGTGGACA TTCCCCGCGA CCGGCTGGTC GTGATCACCG GGCTGTCGGG CTCGGGCAAG TCGTCGCTTG CCTTCGACAC GATCTATGCC GAGGGCCAGC GCCGCTATGT CGAGAGCCTC AGCGCCTATG CGCGCCAGTT CCTCGACATG ATGCAGAAGC CCGATGTGGA TCACATCTCG GGCCTGAGCC CGGCGATCTC GATCGAGCAG AAGACGACCT CGAAGAACCC GCGCTCCACC GTCGGTACGG TGACGGAAAT CTACGACTAC ATGCGGCTGC TCTTCGCGCG GGTCGGCACA CCCTACAGCC CCGCCACCGG TCTGCCCATC GAAGCACAGC AGGTGCAGGA CATGGTGGAC CGGGTGATGG CGATGGAGGA GGGGACGCGC GCCTACCTGC TGGCCCCGAT CATCCGCGAC CGCAAGGGCG AATACCGCAA GGAATTCCTG GAGCTGCGCA AGCAGGGGTT CCAGCGGGTG AAGGTCGACG GCGCATTCCA CGACCTCGAC AGCCCGCCCA CGCTGGACAA GAAATTCCGC CACGATATCG ACGTGGTGGT GGACCGGATC GTTGTGAAGG AGGGGATCGA GACCCGGCTG GCCGACAGCT TCCGCACCGC ACTCGACCTT GCCGACGGGA TCGCGATCCT GGAGACCGCC CCGACGGAGG GGGAGCCGGA GCGGCACACG TTCTCGGAAA AATTCGCCTG TCCGGTGTCG GGCTTCACCA TTCCGGAAAT CGAGCCGCGG TTGTTTTCGT TCAACGCGCC CTTCGGGGCC TGCCCGGCCT GCGACGGGTT GGGCGTCGAG CTGTTCTTCG ACGAGCGCCT CGTGGTGCCG GATGCCACGC TGACGCTGGC CAACGGGGCG CTGGCGCCCT GGCGCAAGGG CAAGTCGCCC TATTTCCTGC AGACCATCAA CGCCATCGCC AAGCATTACG AATTCGACCC CAAGACCCCG TGGAAGGCCC TGCCCGAAAA GGTGCAGGAG GTGTTCCTGC GCGGCTCCGG CGAGGAAGAG ATCACCTTCC GCTATGACGA GGGCGGCCGG GTCTATCAGG TCAGCCGTGC CTTCGAGGGG GTGATCCCCA ACATGGAGCG GCGCTACCGC GAAACCGACA GCAGTTGGAT CCGGGAGGAG TTCGAGCGCT ATCAGAACAA CCGCTCCTGC GGGACCTGCG GCGGCTATCG CCTGCGGCCC GAGGCGCTGG CGGTGAAGAT TGCCGGGCTC CATGTGGGCG AGGTGGTGCA GATGTCGATC CGGGAGGCGC ATGACTGGTG CCGGACCGTG CCGGAGCACC TGAGCGTGCA GAAGAACGAG ATCGCCCGCG CTATCCTCAA GGAGATCCGC GAACGGCTCG GCTTTCTCAA CAATGTGGGT CTCGAATACC TCACGCTCAG CCGCAATGCC GGGACCCTGT CGGGAGGCGA GAGCCAGCGC ATCCGGCTGG CGAGCCAGAT CGGATCGGGG CTGACCGGGG TGCTCTATGT GCTCGACGAG CCGTCCATCG GGCTGCACCA GCGCGATAAT GACCGGCTGC TGACGACTCT GAAGAACCTG CGCGACCAGG GCAATACGGT GATCGTGGTC GAGCATGACG AGGAGGCCGT GCGGGAGGCC GATTACGTTT TCGACATCGG CCCCGGCGCG GGGGTGCATG GCGGCCAGGT GGTGGCCCAT GGCACGCCGG CCCAGATCAT GGCCAACCCG GCCTCGATCA CCGGCGATTA CCTCGCCGGG CGGCGCGAGA TCCCGGTGCC CGCCACCCGC CGCAAGGGTA ACAAGAAAAA GGTCACGGTG CGCAAGGCCA CGGGCAACAA CCTGCAGGAC CTGACGGTGG ATTTCCCCCT GGGCAAGTTC GTCTGCGTGA CCGGCGTGTC GGGGGGCGGC AAGTCCACCC TGACCATCGA GACCCTGTTC AAGACCGCGT CCATGCGGCT GAACGGGGCG CGCCAGACGC CGGCACCCTG CGAGACGATC AAGGGGTTGG AGCATCTCGA CAAGGTCATC GATATCGACC AGCGGCCCAT CGGGCGCACG CCGCGGTCGA ACCCGGCGAC CTACACGGGC GCGTTCACGC CGATCCGCGA CTGGTTCGCC GGGCTGCCCG AGGCCAGGAC GCGCGGCTAC AAGCCGGGGC GGTTTTCCTT CAACGTGAAG GGCGGGCGCT GCGAGGCGTG CCAAGGCGAC GGGGTGATCA AGATCGAGAT GCACTTTTTG CCGGATGTCT ATGTCGAATG CGAGACCTGC AAGGGCAAGC GGTACAACCG CGAGACCCTG GAGGTGACAT TCAAGGGCAA GTCCATCGCC GATGTGCTGG ACATGACGGT CGAGGATGCG CAGGAGTTCT TCAAGGCGGT GCCGTCGATC CGCGAGAAGA TGGATGCGCT GATGCGCGTC GGGCTCGGCT ATATCAAGGT GGGCCAGCAG GCGACGACCC TCTCGGGCGG CGAGGCGCAG CGCGTCAAGC TCAGCAAGGA GTTGGCCAAG CGGTCCACGG GCCGGACGCT CTATATCCTG GACGAGCCGA CCACGGGGCT GCATTTCGAG GATGTCCGCA AGCTGCTGGA GGTGCTGCAC GAGTTGGTGG AGCAGGGCAA CACCGTGGTG GTGATCGAGC ACAACCTCGA TGTGATCAAG ACCGCCGACT GGCTGATCGA TATCGGCCCC GAAGGCGGGG ACGGGGGCGG CACGCTGGTG GCCACGGGCA CGCCGGAGCA GGTGGCCGAG GTCGCCGAGA GCCACACGGG CCGCTACCTC AAGCCCATGC TCGCGGGCGC CAAGCGGGTC GCGGCGGAAT AG
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Protein sequence | MPELKKIEVR GAREHNLKSI DVDIPRDRLV VITGLSGSGK SSLAFDTIYA EGQRRYVESL SAYARQFLDM MQKPDVDHIS GLSPAISIEQ KTTSKNPRST VGTVTEIYDY MRLLFARVGT PYSPATGLPI EAQQVQDMVD RVMAMEEGTR AYLLAPIIRD RKGEYRKEFL ELRKQGFQRV KVDGAFHDLD SPPTLDKKFR HDIDVVVDRI VVKEGIETRL ADSFRTALDL ADGIAILETA PTEGEPERHT FSEKFACPVS GFTIPEIEPR LFSFNAPFGA CPACDGLGVE LFFDERLVVP DATLTLANGA LAPWRKGKSP YFLQTINAIA KHYEFDPKTP WKALPEKVQE VFLRGSGEEE ITFRYDEGGR VYQVSRAFEG VIPNMERRYR ETDSSWIREE FERYQNNRSC GTCGGYRLRP EALAVKIAGL HVGEVVQMSI REAHDWCRTV PEHLSVQKNE IARAILKEIR ERLGFLNNVG LEYLTLSRNA GTLSGGESQR IRLASQIGSG LTGVLYVLDE PSIGLHQRDN DRLLTTLKNL RDQGNTVIVV EHDEEAVREA DYVFDIGPGA GVHGGQVVAH GTPAQIMANP ASITGDYLAG RREIPVPATR RKGNKKKVTV RKATGNNLQD LTVDFPLGKF VCVTGVSGGG KSTLTIETLF KTASMRLNGA RQTPAPCETI KGLEHLDKVI DIDQRPIGRT PRSNPATYTG AFTPIRDWFA GLPEARTRGY KPGRFSFNVK GGRCEACQGD GVIKIEMHFL PDVYVECETC KGKRYNRETL EVTFKGKSIA DVLDMTVEDA QEFFKAVPSI REKMDALMRV GLGYIKVGQQ ATTLSGGEAQ RVKLSKELAK RSTGRTLYIL DEPTTGLHFE DVRKLLEVLH ELVEQGNTVV VIEHNLDVIK TADWLIDIGP EGGDGGGTLV ATGTPEQVAE VAESHTGRYL KPMLAGAKRV AAE
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