| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1792 |
|---|
| Symbol | |
|---|
| ID | 5713361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1862665 |
|---|
| End bp | 1863276 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641267712 |
|---|
| Product | putative LysE type translocator |
|---|
| Protein accession | YP_001533135 |
|---|
| Protein GI | 159044341 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1280] Putative threonine efflux protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.00860151 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGCTCG CGGCCTTCGC CTCGATTGCC TTCATTCACC TTCTGGCGGC GATCAGCCCG
GGGCCCTCTT TCGTGGTGAT CACCCGAACC GCCGCGGCGG AGGGTCTGGG CGCGGGGCTC
TTGCTGGCGC TGGCCTTCGG GGTCGGCGCG ACGGTTTGGG CGGGCGCGGC CCTGCTGGGG
CTTGCGGCGC TTTTCCAGGT GATGCCGGTG CTGCTGACTG CGATGAAGCT GGCGGGGGCC
GCCTTCCTGT TATTCGTGGC CTTCATGATG TGGCGCCACG CGCCCGACCC GCTGCCGGAG
GCGTCGGGGA CGGTGCCGCG CACGGGCTGG GCGACATTCA GGCTGGGCCT CTTCACGCAG
CTTTCGAACC CCAAGGTGCC GGTGTTCTTC GGGGCGGTTT TCGTGGGCGT CCTGCCCGCC
GACATCTCCG GGGGCGAGAT CGCGCTGGTG CTGGCGCTGG TGCTGCTGGT CGAAGGCCTG
TGGTACGTGG TGGTGGCGCG GCTCTTCTCG CTGCCCGGAC CACGGGCGGT CTATATGCGC
GCCAAGACCT GGATCGACCG GGTCCTGGGC GGCGCGCTGG CCCTGGTGGG GGCGCGGATC
GCGCTGAGTT GA
|
|---|
| Protein sequence | MTLAAFASIA FIHLLAAISP GPSFVVITRT AAAEGLGAGL LLALAFGVGA TVWAGAALLG
LAALFQVMPV LLTAMKLAGA AFLLFVAFMM WRHAPDPLPE ASGTVPRTGW ATFRLGLFTQ
LSNPKVPVFF GAVFVGVLPA DISGGEIALV LALVLLVEGL WYVVVARLFS LPGPRAVYMR
AKTWIDRVLG GALALVGARI ALS
|
|---|
| |